Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00827 ATGAGTTCTTCAGTGACAGGAGCTGCTGGATCTGGTGATGATGGAAGAAGTAGTAACAACAAAGGAAAAAGACCTGCCTACAAACGCCTTACTTCTGCTCAAACAGCTAAACTTGAAAAGTACATTATTGATTGTCCTCATCCTGATGAAGCTCAACGAAGGCAACTTGCTGAGGAGGTTGGGATTGAGCCAAAACAAGTCAAGTTTTGGTTTCAGAATAAGAGAACTCAAATAAAGAATCAACATGAGCGAGCGGATAACAATGCTCTTCGGGCTGAGAATGAAAGGATACAAAACGAGAATCTCCTAATGAAAGAGGCACTTAATAATATACTTTGCCCTTCTTGTGGGGGCCCACCTGCCGCTGGTGAAGACCATGAACACTTCATGCAGAAAATGCTTCTTGAAAATGCCCACCTTAAGGAAGAGGCAAGCCTAAACTCCTTCAACACATCCTCTTTTCAACATCATGGGAAAATATCAAACATTCTTTCAAGGTACTTGGAGAAAGAGGTGCTACACCCTGAAGATATAGAGCAGCTAAACGCAATTCCCAACAGCATAGACATCGCGGGATCATCGTCAACAACACCACTGTATGATTTCTCAGTTGCAAATGGAACCTTGTTGAACCAACAACAAGGGGTTAGCATCAATGATGTTGTTGCAGGCCCTTCTTCTTCTTTACTTCATCATCAGAACTATGTTCCACCACCAATTGTTGCTGATAACAATGATAATGGGGAACAAGGTGTGGCAGTAATGGAGGTTGCATTGGCCTCCGAGGTTGCGGCTACCGCCATGGATGAACTGCTTAGGCTTATTCGCCTCAATGAACCGTTCTGGGTTGGTTCTGCTTTTGATGGGAAGCTTGTGCTTCACGGTGAAAGCTACGAAAAGATGTTCCCTAGGGTTTATCAATTCAACGATGGAAACTCTCGTGTTGAATCATCAAAGGAATCAGGGATTGTCAACATAAGTGGGATTCAACTGGTTGATTTGTTTCTTGATTCGGAAAAATGGGTGAATGCTTTTCCAACAATAGTTACAAAAGCGCAGACACTTGAAGTGTTTGAAATTGGATTGCCAGAAAGTCGAAGCGGAGCCTTACAATTGATGTATGAAGAGATGCACGGATTTTCACCATTGGTGGCATCTCGTGAATTCCAATTCCTCCGGCAGTGCCATCAACTGGAGCCTGGATCGTGGATCATAACAGATGTGTCTTTCGATTCACTTCGAAACTACCCCTTTCGCCTTCCTCGCTCTCGCTCTTGGAGACGTCCCTCTGGATGCTTGATCCAGGAACTCCCCAACTCCACTTCTTGCATGGTTACTTGGATCGAACACGTGGAAGTGGATGATAAGATTCAGACTCACCGGCTTTACAGAGATCTTGTTAGCACCAATGCTGCATATGGAGCACAGAGATGGATTATGGAACTTCAAAGAATGTGCCACAGATCTATGAGCTATGCTCTTGAAAACATACCTGATCATGAATATGGTGGAGTGATAAATAGAAATGAAGGAAGGAGGAGTGTGATGAGGCTAGGTCACAGGCTGGTGAGGCTATTTAGTGAGAATTTGAACATGAGTGGAAAGGTTGAGTTTCCGCAGTTGAGTGTGGAGTACAACAGTGGGGTGAGGATCTCAGCTCGAAGATGCACAGAGAAAGGGCAGCCAAATGGGACCATTGTGATTGCTGCAACCTCTCTTTGGCTGCCTCTCCATTACCACACAGTGTTTGAATTCTTGACTGATATCAACAAACGCTCTCAGTGGGATGTTCTTTTCTGCACAACTCCAGTCCACTACATTGCACACATCTCAAATGGAACTCATCCTGCCAACAATACATCAATTATCCAGCCATTCATGTCAAGCGAGAACAATGCTGTTATAATTCAAGAAAGCTTCATAGACCCAGTGGGATCATCTTACATAGTGTATGCTCCAGTTGACGTGGAAGCCATCAACGTCGCCATTAGCGGCGACGACTCTTCCACCATCCCTATCCTTCCCTCAGGATTTGTTGTGTGTGGAGATGGCAGAGCATCAATGATGAGCAACAGCACAACCATTATTGCACCATCAGTTCTTGGTGGAGTTGGAAGCTATGGTTATCAGCATAGATCAGAAGGAGGGTCACTGTTGACGGTGGCATTCCAAATTCTGGTTAACACCATCACTTGTGGACCCAACCTAGTGAATATGGAATCTGTGGATTCTATTAACACCCTTTTGACTTCAACTGTCCAGAAGATTAAGGACGCTTTGAACTGCAATGCCTTGCACTGA 2301 0.4446 MSSSVTGAAGSGDDGRSSNNKGKRPAYKRLTSAQTAKLEKYIIDCPHPDEAQRRQLAEEVGIEPKQVKFWFQNKRTQIKNQHERADNNALRAENERIQNENLLMKEALNNILCPSCGGPPAAGEDHEHFMQKMLLENAHLKEEASLNSFNTSSFQHHGKISNILSRYLEKEVLHPEDIEQLNAIPNSIDIAGSSSTTPLYDFSVANGTLLNQQQGVSINDVVAGPSSSLLHHQNYVPPPIVADNNDNGEQGVAVMEVALASEVAATAMDELLRLIRLNEPFWVGSAFDGKLVLHGESYEKMFPRVYQFNDGNSRVESSKESGIVNISGIQLVDLFLDSEKWVNAFPTIVTKAQTLEVFEIGLPESRSGALQLMYEEMHGFSPLVASREFQFLRQCHQLEPGSWIITDVSFDSLRNYPFRLPRSRSWRRPSGCLIQELPNSTSCMVTWIEHVEVDDKIQTHRLYRDLVSTNAAYGAQRWIMELQRMCHRSMSYALENIPDHEYGGVINRNEGRRSVMRLGHRLVRLFSENLNMSGKVEFPQLSVEYNSGVRISARRCTEKGQPNGTIVIAATSLWLPLHYHTVFEFLTDINKRSQWDVLFCTTPVHYIAHISNGTHPANNTSIIQPFMSSENNAVIIQESFIDPVGSSYIVYAPVDVEAINVAISGDDSSTIPILPSGFVVCGDGRASMMSNSTTIIAPSVLGGVGSYGYQHRSEGGSLLTVAFQILVNTITCGPNLVNMESVDSINTLLTSTVQKIKDALNCNALH 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00827 766 SMART START_1 262 488 IPR002913 GO:0008289
Aip04g00827 766 SUPERFAMILY Bet v1-like 546 757 - -
Aip04g00827 766 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Aip04g00827 766 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 762 IPR042160 -
Aip04g00827 766 MobiDBLite consensus disorder prediction 1 16 - -
Aip04g00827 766 SUPERFAMILY Homeodomain-like 17 86 IPR009057 -
Aip04g00827 766 CDD START_ArGLABRA2_like 258 486 - -
Aip04g00827 766 Gene3D - 11 98 - -
Aip04g00827 766 SMART HOX_1 23 85 IPR001356 GO:0003677
Aip04g00827 766 ProSiteProfiles START domain profile. 253 491 IPR002913 GO:0008289
Aip04g00827 766 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 19 762 - -
Aip04g00827 766 SUPERFAMILY Bet v1-like 260 486 - -
Aip04g00827 766 Coils Coil 75 110 - -
Aip04g00827 766 CDD homeodomain 21 82 IPR001356 GO:0003677
Aip04g00827 766 Gene3D - 292 485 IPR023393 -
Aip04g00827 766 Pfam Homeodomain 27 79 IPR001356 GO:0003677
Aip04g00827 766 Pfam START domain 262 487 IPR002913 GO:0008289
Aip04g00827 766 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Aip04g00827 766 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00827 Aip-Chr4 10828960 10836624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00827 23 761 Homeobox Transcription Factor Family AT1G73360 40.562 1.27e-180 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip04g00827 START 5.5e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00827 K09338 - gmx:100795075 792.727