LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g00800	ATGGCACTTTCTATGCACAAGGACGCGTCAAATAGCATGGATTCAAGCAAGTACGTGAGGTACACACCTGAACAAGTTGAGGCTTTGGAAAGGGTCTATGCTGAATGTCCAAAGCCTTCTTCTTTGAGAAGACAACAACTCATCAGAGAGTGCCCAATCCTCTCAAACATTGAGCCTAAACAGATCAAAGTCTGGTTCCAGAACCGAAGATGCCGTGAGAAGCAAAGGAAAGAAGCCTCTCGCCTGCAGACAGTGAATAGAAAGCTGACTGCAATGAACAAGCTGTTGATGGAGGAGAATGACCGGTTGCAGAAGCAGGTCTCCCATTTGGTCTATGAAAATGGATATATGAAGCAACAAATTCATACTGCATCTGCTACTACTACCACAGACAATAGCTGTGAGTCTGTTGTGATGAGTGGTCAGAACCAACAACAGCAAAACCCAACACCTCAGCATCCCCAAAGGGATGCTAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGTGTGGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAACCCACAAAGGTTGCTGAGATTCTCAAAGATCGACCATCATGGTACCGCGACTGTCGGTGCCTTGATGTGTTGAGCATTGTTCCTACAGGGAGTGGGGGCACTATAGAGCTCATATATATGCAGACTTACGCGCCAACTACTTTGGCAGCAGCGCGTGACTTCTGGACAGTAAGATACACTACAAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGATCATTGACATCTTCGACCGGCGGCCCTACAGGGCCTCCTTCTTCAAACTTTGTAAGAGCTGAGATGCTTCCCAGTGGTTATCTAATTAGACCCTGCGAGGGTGGTGGCTCCATTATTCATATTGTAGATCATGTTGATTTAGATGTCTGGAGTGTTCCTGAAGTACTGAGGCCGCTTTACGAATCTTCAAAAATCTTGGCCCAGAAATTGACCATTGCAGCCCTGCAACATATAAGACAGATTGCACAAGAATCTAGCGGAGAAATTCAGTATGGTGGGGGACGCCAGCCTGCTGTGTTAAGGACATTTAGCCAGAGACTCTGCCGGGGGTTCAATGATGCTGTTAATGGGTTTGTGGAGGATGGTTGGTCACTGCTGGGCAATGATGGGGTAGAAGATGTGACTATAGCTATAAACTCATCTCCCAACAAATTTTTGGGGTCCCAGTACAATTCATCAATGTTCCCAGCTTTTGGAGGTGGGGTTCTGTGTGCCAAGGCATCCATGCTGTTGCAGAATGTTCCTCCGGCTTTGCTTGTTCGATTCTTGAGGGAGCATCGGTCTGAGTGGGCTGATTATGGTGTTGATGCATACTCTGCTGCATGTCTTAAGGCTACTCCCTATGCTGTTCCTTGTGCAAGACCTGGTGGCTTCCCAAGCACCCAGGTCATTTTACCACTTGCTCATACTATTGAGCATGAGGAGTTCTTGGAGGTAGTTCGGATAGAGGGTCATGCATTTTCCCCTGAAGATGTTGCATTGGCACGTGATATGTATTTGCTTCAGCTTTGCAGTGGGGTTGATGAAAATGCAATTGGAGCTTGTGCTCAATTGGTATTTGCACCTATTGATGAATCATTTGCTGATGATGCTCTTCTACTTCCTTCTGGATTCCGCGTCATACCATTAGATCCCAAAACAGATACTCCAACCACAACAAGGACATTAGATTTGGCATCCACACTTGAAGTAGGTTCTGGGAATACACGTGCAGCCGGAGAAGCCGATGATTACAATCTTCGGTCAGTCCTTACTATTGCATTCCAATTCACCTTTGAGAACCATTTGCGCGACAATGTGGCTGCCATGGCTCGCCAGTATGTGCGTAGTGTTGTGGGGTCGGTTCAGAGGGTTGCAATGGCAATTGCTCCATCTCGGCTCAGTACTCAACTGGGGCCAAAGTCTCTCCCTGGTTCACCGGAGGCTCTTACTTTGGCAAGATGGATCAGCCGAAGCTACCGAGTCCACACTGGTTCAGACCTTTTTCGGGTTGAGTCAACTGCTGGTGATGCAATCTTGAAGCAACTTTGGCAACATTCTGATGCAATCATGTGCTGTTCTGTGAAAACAAATGCATCTCCGGTATTCACCTTTGCAAACCAAGCCGGACTTGACATGCTCGAAACCACTCTTGTCGCCCTTCAAGACATTATGCTCGACAAAGTTCTTGATGAATCTGGCAGGAAGATTCTTTGCTCTGAGTTCTCCAAGATTATGCAACAGACTTCATTTGTTAATGGTAGACAACAACTTATGACCTCTATTGTTACCTGTACATGA	2445	0.472	MALSMHKDASNSMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASATTTTDNSCESVVMSGQNQQQQNPTPQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLDVLSIVPTGSGGTIELIYMQTYAPTTLAAARDFWTVRYTTSLEDGSLVICERSLTSSTGGPTGPPSSNFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVEDGWSLLGNDGVEDVTIAINSSPNKFLGSQYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKATPYAVPCARPGGFPSTQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKTDTPTTTRTLDLASTLEVGSGNTRAAGEADDYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQLGPKSLPGSPEALTLARWISRSYRVHTGSDLFRVESTAGDAILKQLWQHSDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKILCSEFSKIMQQTSFVNGRQQLMTSIVTCT	814

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g00800	814	SUPERFAMILY	Bet v1-like	415	601	-	-
	Aip04g00800	814	SUPERFAMILY	Homeodomain-like	17	79	IPR009057	-
	Aip04g00800	814	Pfam	MEKHLA domain	699	797	IPR013978	-
	Aip04g00800	814	Pfam	Homeodomain	17	75	IPR001356	GO:0003677
	Aip04g00800	814	ProSiteProfiles	START domain profile.	157	358	IPR002913	GO:0008289
	Aip04g00800	814	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14	13	797	IPR044830	GO:0003700
	Aip04g00800	814	SMART	START_1	166	376	IPR002913	GO:0008289
	Aip04g00800	814	Gene3D	-	185	378	IPR023393	-
	Aip04g00800	814	MobiDBLite	consensus disorder prediction	132	159	-	-
	Aip04g00800	814	SMART	HOX_1	14	80	IPR001356	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip04g00800	Aip-Chr4	10468244	10473360	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip04g00800	1	796	Homeobox Transcription Factor Family	AT2G34710	80.693	0.0	1326

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Aip04g00800		START	1.8e-52	CL0209

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g00800	K09338		-	gmx:100779499	1459.89

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