Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00800 ATGGCACTTTCTATGCACAAGGACGCGTCAAATAGCATGGATTCAAGCAAGTACGTGAGGTACACACCTGAACAAGTTGAGGCTTTGGAAAGGGTCTATGCTGAATGTCCAAAGCCTTCTTCTTTGAGAAGACAACAACTCATCAGAGAGTGCCCAATCCTCTCAAACATTGAGCCTAAACAGATCAAAGTCTGGTTCCAGAACCGAAGATGCCGTGAGAAGCAAAGGAAAGAAGCCTCTCGCCTGCAGACAGTGAATAGAAAGCTGACTGCAATGAACAAGCTGTTGATGGAGGAGAATGACCGGTTGCAGAAGCAGGTCTCCCATTTGGTCTATGAAAATGGATATATGAAGCAACAAATTCATACTGCATCTGCTACTACTACCACAGACAATAGCTGTGAGTCTGTTGTGATGAGTGGTCAGAACCAACAACAGCAAAACCCAACACCTCAGCATCCCCAAAGGGATGCTAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGTGTGGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAACCCACAAAGGTTGCTGAGATTCTCAAAGATCGACCATCATGGTACCGCGACTGTCGGTGCCTTGATGTGTTGAGCATTGTTCCTACAGGGAGTGGGGGCACTATAGAGCTCATATATATGCAGACTTACGCGCCAACTACTTTGGCAGCAGCGCGTGACTTCTGGACAGTAAGATACACTACAAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGATCATTGACATCTTCGACCGGCGGCCCTACAGGGCCTCCTTCTTCAAACTTTGTAAGAGCTGAGATGCTTCCCAGTGGTTATCTAATTAGACCCTGCGAGGGTGGTGGCTCCATTATTCATATTGTAGATCATGTTGATTTAGATGTCTGGAGTGTTCCTGAAGTACTGAGGCCGCTTTACGAATCTTCAAAAATCTTGGCCCAGAAATTGACCATTGCAGCCCTGCAACATATAAGACAGATTGCACAAGAATCTAGCGGAGAAATTCAGTATGGTGGGGGACGCCAGCCTGCTGTGTTAAGGACATTTAGCCAGAGACTCTGCCGGGGGTTCAATGATGCTGTTAATGGGTTTGTGGAGGATGGTTGGTCACTGCTGGGCAATGATGGGGTAGAAGATGTGACTATAGCTATAAACTCATCTCCCAACAAATTTTTGGGGTCCCAGTACAATTCATCAATGTTCCCAGCTTTTGGAGGTGGGGTTCTGTGTGCCAAGGCATCCATGCTGTTGCAGAATGTTCCTCCGGCTTTGCTTGTTCGATTCTTGAGGGAGCATCGGTCTGAGTGGGCTGATTATGGTGTTGATGCATACTCTGCTGCATGTCTTAAGGCTACTCCCTATGCTGTTCCTTGTGCAAGACCTGGTGGCTTCCCAAGCACCCAGGTCATTTTACCACTTGCTCATACTATTGAGCATGAGGAGTTCTTGGAGGTAGTTCGGATAGAGGGTCATGCATTTTCCCCTGAAGATGTTGCATTGGCACGTGATATGTATTTGCTTCAGCTTTGCAGTGGGGTTGATGAAAATGCAATTGGAGCTTGTGCTCAATTGGTATTTGCACCTATTGATGAATCATTTGCTGATGATGCTCTTCTACTTCCTTCTGGATTCCGCGTCATACCATTAGATCCCAAAACAGATACTCCAACCACAACAAGGACATTAGATTTGGCATCCACACTTGAAGTAGGTTCTGGGAATACACGTGCAGCCGGAGAAGCCGATGATTACAATCTTCGGTCAGTCCTTACTATTGCATTCCAATTCACCTTTGAGAACCATTTGCGCGACAATGTGGCTGCCATGGCTCGCCAGTATGTGCGTAGTGTTGTGGGGTCGGTTCAGAGGGTTGCAATGGCAATTGCTCCATCTCGGCTCAGTACTCAACTGGGGCCAAAGTCTCTCCCTGGTTCACCGGAGGCTCTTACTTTGGCAAGATGGATCAGCCGAAGCTACCGAGTCCACACTGGTTCAGACCTTTTTCGGGTTGAGTCAACTGCTGGTGATGCAATCTTGAAGCAACTTTGGCAACATTCTGATGCAATCATGTGCTGTTCTGTGAAAACAAATGCATCTCCGGTATTCACCTTTGCAAACCAAGCCGGACTTGACATGCTCGAAACCACTCTTGTCGCCCTTCAAGACATTATGCTCGACAAAGTTCTTGATGAATCTGGCAGGAAGATTCTTTGCTCTGAGTTCTCCAAGATTATGCAACAGACTTCATTTGTTAATGGTAGACAACAACTTATGACCTCTATTGTTACCTGTACATGA 2445 0.472 MALSMHKDASNSMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASATTTTDNSCESVVMSGQNQQQQNPTPQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLDVLSIVPTGSGGTIELIYMQTYAPTTLAAARDFWTVRYTTSLEDGSLVICERSLTSSTGGPTGPPSSNFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVEDGWSLLGNDGVEDVTIAINSSPNKFLGSQYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKATPYAVPCARPGGFPSTQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKTDTPTTTRTLDLASTLEVGSGNTRAAGEADDYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQLGPKSLPGSPEALTLARWISRSYRVHTGSDLFRVESTAGDAILKQLWQHSDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKILCSEFSKIMQQTSFVNGRQQLMTSIVTCT 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00800 814 SUPERFAMILY Bet v1-like 415 601 - -
Aip04g00800 814 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Aip04g00800 814 Pfam MEKHLA domain 699 797 IPR013978 -
Aip04g00800 814 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Aip04g00800 814 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Aip04g00800 814 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 797 IPR044830 GO:0003700
Aip04g00800 814 SMART START_1 166 376 IPR002913 GO:0008289
Aip04g00800 814 Gene3D - 185 378 IPR023393 -
Aip04g00800 814 MobiDBLite consensus disorder prediction 132 159 - -
Aip04g00800 814 SMART HOX_1 14 80 IPR001356 GO:0003677
Aip04g00800 814 CDD bZIP 69 108 - -
Aip04g00800 814 Pfam START domain 167 374 IPR002913 GO:0008289
Aip04g00800 814 SUPERFAMILY Bet v1-like 167 378 - -
Aip04g00800 814 CDD homeodomain 17 77 IPR001356 GO:0003677
Aip04g00800 814 Coils Coil 86 106 - -
Aip04g00800 814 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX32 13 797 - -
Aip04g00800 814 MobiDBLite consensus disorder prediction 132 157 - -
Aip04g00800 814 Gene3D - 8 83 - -
Aip04g00800 814 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Aip04g00800 814 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00800 Aip-Chr4 10468244 10473360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00800 1 796 Homeobox Transcription Factor Family AT2G34710 80.693 0.0 1326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip04g00800 START 1.8e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00800 K09338 - gmx:100779499 1459.89