Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00773 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCTGCTCCCCCCGCTGCCGCCACCGTCTCCGCACCCTCCGCCGGACTTCTCTCCAATCAAAACGATCCAACCGCGGCGGCCGCTGCAGCCGCGGTTCCCAATGGCGCTGCCGCAGCTGCGCCCACTGCTGGAGACCCCGGAGCTGCCGGGAATGTGCCCGGGAGGCGGAGCTTCCGGCAGACAGTGTGCCGGCACTGGCTAAGGAGCTTGTGTATGAAGGGAGACGCGTGCGGGTTCTTGCATCAGTACGACAAGGCGAGGATGCCGGTGTGCCGGTTCTTTCGGCTGTACGGTGAGTGCCGCGAGCAGGATTGCGTGTACAAGCACACCAACGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGCCGATACAGACATGCAAAATCTGCTGGACCTCCACCTTCTGTTGATGAGGTCCTTCAAAAGATCCAGCATTTATATTCTTACAACTACAATGCATCTAACAAGTTTTTCCAACAAAGGGGTTCAAACTATAATCAACAAGCTGAAAAATCTCAATTTCCTCAAGGAAATAATTCTACAAACCAAGCTGTTGCTGGAAAACCATTACAAGCAGAGTCGGGTAATGTCCAGCAGCAACAAGTTCAACAGGCTCAGCAGCCAGTCAATCAAAGCCAAGTGCAAAATGTTGCTAGTGGTCAGCCCAATCAGGCGAATAAAACTGCAACTCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCAGTACAACAAGGAGTATGGGCAACACAAAGGAGCAACGAGTCAAAACTAAATGAGGCTTTTGATTCTGTGGAAAATGTTATACTGATTTTCTCAGTCAACCGAACTCGCCATTTCCAGGGTTGTGCAAAGATGACCTCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACTGCACATTATGGACGGAATTTCTCTGTTAAATGGTTAAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTGAGGAATCCATACAATGAAAATTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCCATCGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAGCTTATGGCTATCTCAATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAGGCAAAGGGAGTGAATCCAGACAATGGAGGAGAGAATCCGGATATTGTCCCATTTGAAGACAACGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCATGTTGTTGGGCCAGCTGTTCAAGGCAGAGGTAGGGGCAGAGGCATGATGTGGCCGCCTCACATGCCTCTTGCACGCGGAGCCAGACCTATGCCTGGAATGCCAGGTTTTAACCCAGTAATGATGGGTGATGGATTATCATATGGGCCTGTTGGACCTGATGGCTTCGGTATGCCCGATCTTTTTGGTGTGGGCCCTCGTGGTTTTCCTCCATATGGTCCTAGGTTCTCTGGTGATTTTGCAGGACCCCCTGCAGCCATGATGTTCCGTGGGCGACCTTCCCAACCTGGGATGTTTCCAGGTGGTGGATTTGGGATGATGATGAATCCTGCACGTCCTCCCTTTATGGGGGGGATGGGTGCAAATCCTCCAAGAGCCAGTAGGCCAGTTAATATGCCTCCGATGTTTCCACCGCCTCCACCTCCACCTCAAAATAACAACCGACTTGTAAAGAGGGATCAAAGAATTAATGATCGGAATGATAAATTTGGTTCAGGATTAGAGCAGGGCAAGAATCAGGATATGATGAGTCAAAGTGGTGGACCTGATGAAGACATGCAAGGATACAAAGCACAGCAGGATGATCAGTATGCTGTCAACACCTTCAGGAACGATGATAGTGAAAGCGAGGATGAGGCACCTCGGCGGTCAAGGCATGGAGAGGGGAAAAAGAGAAGGCGAAGCTTAGAAGATGCCAATGCAAGCTCTAATCACTAG 2091 0.4897 MEDSEGVLSFDFEGGLDAAPPAAATVSAPSAGLLSNQNDPTAAAAAAAVPNGAAAAAPTAGDPGAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPSVDEVLQKIQHLYSYNYNASNKFFQQRGSNYNQQAEKSQFPQGNNSTNQAVAGKPLQAESGNVQQQQVQQAQQPVNQSQVQNVASGQPNQANKTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHVVGPAVQGRGRGRGMMWPPHMPLARGARPMPGMPGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRGFPPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARPPFMGGMGANPPRASRPVNMPPMFPPPPPPPQNNNRLVKRDQRINDRNDKFGSGLEQGKNQDMMSQSGGPDEDMQGYKAQQDDQYAVNTFRNDDSESEDEAPRRSRHGEGKKRRRSLEDANASSNH 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00773 696 MobiDBLite consensus disorder prediction 415 471 - -
Aip04g00773 696 MobiDBLite consensus disorder prediction 437 455 - -
Aip04g00773 696 MobiDBLite consensus disorder prediction 624 638 - -
Aip04g00773 696 SMART c3hfinal6 102 128 IPR000571 GO:0046872
Aip04g00773 696 SMART c3hfinal6 74 100 IPR000571 GO:0046872
Aip04g00773 696 SMART c3hfinal6 130 154 IPR000571 GO:0046872
Aip04g00773 696 MobiDBLite consensus disorder prediction 218 256 - -
Aip04g00773 696 MobiDBLite consensus disorder prediction 585 604 - -
Aip04g00773 696 MobiDBLite consensus disorder prediction 609 623 - -
Aip04g00773 696 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 688 IPR045168 -
Aip04g00773 696 ProSiteProfiles Zinc finger C3H1-type profile. 74 101 IPR000571 GO:0046872
Aip04g00773 696 SUPERFAMILY CCCH zinc finger 74 105 IPR036855 GO:0046872
Aip04g00773 696 ProSiteProfiles YTH domain profile. 263 398 IPR007275 GO:0003723
Aip04g00773 696 Pfam YT521-B-like domain 342 397 IPR007275 GO:0003723
Aip04g00773 696 Pfam YT521-B-like domain 263 325 IPR007275 GO:0003723
Aip04g00773 696 MobiDBLite consensus disorder prediction 574 696 - -
Aip04g00773 696 Gene3D ph1033 like domains 241 401 - -
Aip04g00773 696 MobiDBLite consensus disorder prediction 662 690 - -
Aip04g00773 696 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 688 - -
Aip04g00773 696 Gene3D - 70 133 - -
Aip04g00773 696 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00773 Aip-Chr4 9721875 9729307 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip04g00773 YTH 3.7e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00773 K14404 - gmx:100802826 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00773 04 9721875 9729307 Aip04g00773 04 9721875 9729307 ECH