Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00727 ATGCAAAAGCACCAACAACTTTGTCTTGAAAATTCAGAACTCAGTACAATAGCATCACTAACAAAAGGAACAAACGTCAATGCAGAAAATCCATGCATGCACATAATAAGCAGAGCAAGATCCAATTTTGAAAGTCTCCCACAACCTGAAAGAGTGATGCAGAAGGAGTTCACGCTAAGGTCCCATGGAAAGCTTGTTCGTGATTTCAAGCACCTCAACCTCGATTTCCAGCTCATCAAGGACGACAATGCCCAGAAGAAGCTTAAGATCGACGCTTGGTTTGGCTCTCGCAAGACCTCTGCCGCCATCCGCACTGCCCTCAGCCAGAACTTCATCACTGGCGTTACTAAGGGATACCGTTATAAGAGGAGGTTCGTCTATGCTCACTTTCCGATTAACGCCAGCATCTCCAACAACAACTCCTCCATCGAGATCCGCAACTTCCTTGACGAAGAGAAGGTGAGGAAGGTGAACATGTTTGAGGGAATGTCTTTGCTTAAAGATAAGCTCGTTTTGGATGGAAATGACATTGAGCTTGTATCAAGAGATACCATGTGA 558 0.4498 MQKHQQLCLENSELSTIASLTKGTNVNAENPCMHIISRARSNFESLPQPERVMQKEFTLRSHGKLVRDFKHLNLDFQLIKDDNAQKKLKIDAWFGSRKTSAAIRTALSQNFITGVTKGYRYKRRFVYAHFPINASISNNNSSIEIRNFLDEEKVRKVNMFEGMSLLKDKLVLDGNDIELVSRDTM 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00727 185 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 61 183 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Aip04g00727 185 PANTHER 60S RIBOSOMAL PROTEIN L9-LIKE 61 183 - -
Aip04g00727 185 Gene3D - 54 118 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Aip04g00727 185 SUPERFAMILY Ribosomal protein L6 62 118 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Aip04g00727 185 SUPERFAMILY Ribosomal protein L6 119 182 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Aip04g00727 185 Gene3D - 119 185 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00727 Aip-Chr4 9085751 9088692 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00727 63 182 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 71.094 3.40e-60 184