Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00716 ATGATGGCAGAAGTCGGTGACCACAATAGCAACACCACCACATGTGCTGCAGTTCTCAACTCCATGGAAGAGACCTCCTTTTGCTGTGAACAATTGCCAGAGGGTGAATGCATTGAGGCTCAGAAAGAAGAAGACGGTTCACTAGTTGAGTTGGATTGTCAAAATGGCTTTTCTGAAGGAAGAAAGGAGTTCGTCACACCTGCTGTCGGAATGGAGTTTGAGTCTTATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAAGTCGGATTTCGTGTAAGGGTGAAGAATTCATGGTTCAAGCGAAACAGCAGAGAAAAATATGGTGCGGTGCTTTGCTGTAGCAGTCAGGGTTTCAAAAGAATAAAGGATGTTAACCACATGAGGAAAGAAACAAGAACTGGTTGTCCTGCAATGATAAGGATGAGGTTGATGGACTCTCAGAGGTGGAGGATACTCGAGGTCACACTTGAACACAACCACATGTTAGGTTCTAAGATACACAAATCAGTTAAGAAGATGGGAACTGGAACCAAAAAGAAGTCATTGCCGAGTTCAAATGCTGAAGTGCACACGGTTAAGTTATACCGTGCACTTGTGATAGATGCAGGAGGTAATTCTAGTGCAATCTCAAATGCTAGAGAAGACAGAACTTTGTCGGAATTTTCTAATAGGTTGAACCTTAAAAGGGGTGACACACAAGCCATTTATAATTACCTGTGTCGTATGCAATTGACTaatcctaacttcttttacttgatggatttcaatgatgaagggcatttgaggaatgcattttgggcggattctaggtccagggctgcatgtggttattttggtgatgttatttactttgacaacacttatttgtcaagcaaatatgaaatCCCTCTCGTGGCTTTTGTTGGAATAAATCATCACGGGCAATCAGTGTTACTTGGTTGTGGTCTACTTGCAGGTGAAACAATAGAATCTTATGTATGGTTGTTCAGAGCATGGATTACATCTCTGTCTGGTTGTTCTCCCCAAACTATTATCACTGATAAGTGCAAGGTTTTGCAAAGTGCCATTGCAGAAGTTTTTCCCCAATCTCTCCACCGTTTTGGTTTGCCATTAATCATGAAAAAAGTACCAGAAAAATTGGGAGGGTTGCGCAACTATGATATGATTAGGAAAGAACTGATTAAAGCAATTTATGAGACATTGAAAATGAATGAATTTGAATCAGCATGGGCATTCATGGTTCAACGTTTTGGAGTTGGTGATCACGAATGGCTTCGTTCTCTATACGAAGATCGGAATTGTTGGGCACCGGTATATGTGAAGGATACATTTTTTGCCGGAATGTCTGCAACACGACCTGGTGAAAGCTTTACTCCATTTTTTGATAGATTTGTGCACAAACAGACTCCTTTAAAGGAGTTTCTTGATAAGTATGAACTAGCTCTCCACAAGAAGCACAAGGAAGAGGCTCTTGCAGACATAGAATCAAGAAGCTCAACCCCCTTGCTGAAAACTAGATGTTCTTTTGAATTGCAGCTCTCTAGAATGTACACTAGGCAAATGTTCTTGAAGTTCCAATTTGAGGTGGAAGAAATGTACTCTTGTTTCGGAACAACACAGTTACACGTGGATGGTCCGGTCATAATTTTCTTGGTCAAGGAGCGTGTCTTGTGTGAAGGAAATCGGCGTGAGATTAGGGACTTTGAAGTTCTGTACAGTAGGACAGCAGGCGAAGTTCGCTGCATCTGTAGTTGCTTTAATTTTTATGGATATTTATGCCGGCACGCATTGTGTGTGCTAAATTTCAATGGGGTGGAGGAGATACCTTCCAGATACATTCTTTCAAGGTGGAAGAAAGATTACAAGCGCCTTCATATTCCTGATCATAACACTGGTGTTCCTGATGATATTGACCATTCTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTGCAAGTTGTTGAGGAAGGGACAGTTTCTGTGGACCATTACAATGTAGCTTTGCATGCTATTGAAGAATCACTAAATAAGGTTCATGATGTAGAATATAGGCAGATATAA 2067 0.3817 MMAEVGDHNSNTTTCAAVLNSMEETSFCCEQLPEGECIEAQKEEDGSLVELDCQNGFSEGRKEFVTPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHMRKETRTGCPAMIRMRLMDSQRWRILEVTLEHNHMLGSKIHKSVKKMGTGTKKKSLPSSNAEVHTVKLYRALVIDAGGNSSAISNAREDRTLSEFSNRLNLKRGDTQAIYNYLCRMQLTNPNFFYLMDFNDEGHLRNAFWADSRSRAACGYFGDVIYFDNTYLSSKYEIPLVAFVGINHHGQSVLLGCGLLAGETIESYVWLFRAWITSLSGCSPQTIITDKCKVLQSAIAEVFPQSLHRFGLPLIMKKVPEKLGGLRNYDMIRKELIKAIYETLKMNEFESAWAFMVQRFGVGDHEWLRSLYEDRNCWAPVYVKDTFFAGMSATRPGESFTPFFDRFVHKQTPLKEFLDKYELALHKKHKEEALADIESRSSTPLLKTRCSFELQLSRMYTRQMFLKFQFEVEEMYSCFGTTQLHVDGPVIIFLVKERVLCEGNRREIRDFEVLYSRTAGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPSRYILSRWKKDYKRLHIPDHNTGVPDDIDHSQWSNQLFRSALQVVEEGTVSVDHYNVALHAIEESLNKVHDVEYRQI 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00716 688 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 40 684 - -
Aip04g00716 688 Pfam MULE transposase domain 283 376 IPR018289 -
Aip04g00716 688 Pfam SWIM zinc finger 578 602 IPR007527 GO:0008270
Aip04g00716 688 Pfam FAR1 DNA-binding domain 81 164 IPR004330 -
Aip04g00716 688 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 684 IPR031052 GO:0006355
Aip04g00716 688 ProSiteProfiles Zinc finger SWIM-type profile. 570 606 IPR007527 GO:0008270
Aip04g00716 688 SMART 26again6 581 608 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00716 Aip-Chr4 8849055 8852163 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip04g00716 MULE 2.6e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00716 K17604 - gmx:100796448 1167.91