Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00687 ATGTATCATCAAAAGAGTGTCCCTAGTTCAAGTTTAATCGGAAGCAATTCATTGGTTCATGGTAGTAGCACAATGGATCCTGGCAATGGAGACAATCTTTCCAACAACCCTAATCTCGCCTCAAAGCAACGTTTACGGTGGACACATGAGCTACATGAGCGCTTTGTTGATGCTGTGGCACAGCTTGGTGGACCAGATCGCGCTACACCGAAAGGTGTCCTTAGAGTTATGGGTGTACAAGGCTTAACAATCTACCATGTGAAAAGTCATTTACAGAAATATCGTCTAGCAAAGTACCTACCTGATTCCTCGTCTGATGAAGGAAAGAAAACTGACAAGAAAGAAGCAGGGGATATGCTTTCCAATCTAGATGGTTCACCTGGGATGCAAATTACTGAAGCATTAAAGCTTCAAATGGAGGTGCAGAAACGCCTACATGAACAATTGGAGGTTCAGAGGCAGCTACAATTGAGGATAGAAGCCCAGGGTAAATACTTAAAAAAGATAATTGAAGAGCAACAACGGCTCAGTGGGGTTCTTTCAGATGTACCCGGCTCTGGGATTGCTGGGCAAGTTCCAGAAGATACCTTTCCAGATCCTGATAACAAGACTGATCCGGCAACTCCTGATCCGGAGAAAGCAGCCAAAGAACGTGCCCCAGCAAAGAGTCTTTCAAATGAATCTTTTTCGTCTCACCACGAACCGTTGACGCCAGATTCTGGTTCCCCTGCTGACAGCCCCAAAGGGGAGAGATCAACCAAGAGGCAAAAAGTAAGTGTGGAGGCAACATTTTCCAAACCGGATATGGTGCTCCCGCATCAGATACTGGAGTCGAGCATGTCGTCGTACCAGCAATCAAGCACCGTTTTCCTTACACAAGATCAATTTGATCCATCATTGGGTATGTCTGCTAGAAATAGCGAGGAATTGGAGAAGGTTGGTAGTGGCAGTAACATTTGA 960 0.4542 MYHQKSVPSSSLIGSNSLVHGSSTMDPGNGDNLSNNPNLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKTDKKEAGDMLSNLDGSPGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSDVPGSGIAGQVPEDTFPDPDNKTDPATPDPEKAAKERAPAKSLSNESFSSHHEPLTPDSGSPADSPKGERSTKRQKVSVEATFSKPDMVLPHQILESSMSSYQQSSTVFLTQDQFDPSLGMSARNSEELEKVGSGSNI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00687 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 310 IPR044848 GO:0003700
Aip04g00687 319 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Aip04g00687 319 Gene3D - 41 100 - -
Aip04g00687 319 MobiDBLite consensus disorder prediction 1 38 - -
Aip04g00687 319 MobiDBLite consensus disorder prediction 223 237 - -
Aip04g00687 319 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Aip04g00687 319 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Aip04g00687 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 310 - -
Aip04g00687 319 MobiDBLite consensus disorder prediction 300 319 - -
Aip04g00687 319 MobiDBLite consensus disorder prediction 180 268 - -
Aip04g00687 319 Pfam MYB-CC type transfactor, LHEQLE motif 129 175 IPR025756 -
Aip04g00687 319 MobiDBLite consensus disorder prediction 101 119 - -
Aip04g00687 319 Coils Coil 132 152 - -
Aip04g00687 319 MobiDBLite consensus disorder prediction 198 220 - -
Aip04g00687 319 MobiDBLite consensus disorder prediction 101 127 - -
Aip04g00687 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00687 Aip-Chr4 8543642 8547981 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00687 77 319 G2-like Transcription Factor Family AT2G01060 62.500 7.94e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip04g00687 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00687 - - gmx:100786925 489.189