Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00682 ATGGGGAGAAGAAACGGGGGAAGGTCACTGCATGGAACCCTCCGCCGTCGGCTGGAGTCGTGCAAGTCCAGTCACTCCACTGTCGATGATATCGTTAACCACCTCCGCTCCACTTACCCCGATTACCAACGCACCAAGCACCAAGCCCTCACTCGATTAGTTCAACAAGTCCTCGAGCCACGTTCCAAACACGCGACCAAAGTCTCTGCCAAGCGCAGCGGCCACGATGGCGACGAAGAAAGTGGTCGAAGCGCGCTCCGAAAGAGACAGAAGAGAGTCGACGAAGGTGAAACTCAGGGTTCTGCATCTTCGTCCTCTGCTTCAAGCTTGAGCGCGTCTGGGAGCAGCAGCAGTGAGGATGATGATGGCAGCACAGTGTCTGTTTCGACATCGGAGGACGCAAAATACCGGGAGAAGTACGAACCTGCTGTCGATTTGATGAAGACGATGCTGCGGAAAGCGTATACTCCCACGAAGGATGATAGTGCGAGGAAGATGAAACACGTCGTGCAAGATAAGAACGTTGAAATGGAGGTCGCCAATAGTGACAAGGCTACTAATGAGATTTGTGCTAAGAATGGAGGCGGAGGCAAAGTGAAGGCGGCTTTGAATTTGAAGGATGGTGGTGGCAGCTTTGTTAAGGTGAAGGCAGGACCTAGGTTAAGTGATTTGGGTGGGATGAAGGATCTTCTGGAAACGCTGGTGCAAGAAGTGATTGTTCCATGGTATTATCCTGAGCTTCCAAGAAAGCTATGTCGTACTCCTACTACTGGAATCTTGCTGCATGGGCCACCCGGTTGTGGCAAGACCACACTGGCTCACGCCATAGCAAATGCGACCCGTGTTCCCTTCTATCCGATATCAGCTACTGAGTTGGTTTCTGGAGTATCGGGTGCATCTGAAGAGAATATCAGAGAGCTTTTCGCTAAAGCGCATCGGACTGCCCCATCAATCGTCTTCATTGATGAGATTGATTCAATTGCTTCGAAAAGAGACAATTTACAGCGAGAGATGGAGAAAAGAATTGTTACACAGTTACTTGCCTGCATGGATCAATCAAGTAGGTGTATGCAATCCGCTAATGATTCGGACAGTTCTAATGTTAATCCTAGCTATGTTCTTGTAATTGGAGCTACAAATAGGCCTGATGCTCTTGACTCGGCCTTGAGAAGGCCTGGGCGGGTTCATGATGAATCGTCGAGAGAACATATCCTCTCTTTGCTCACTCGCAATCTTCCACTTCAGGGTTCATTGGATCTAAAAGACATAGCCAGGTCTACACCAGGATATGTCGGTGCTGATTTGGCAGCCTTGATTACGGGGGCGTGTAATTTGGCCATGAAGAGAATTATTTCCAAAAGGATAGGGAAACATGAGACAATTGATCTTGAAGACTGGTGGAGGTGGGGCGAACCTTGGCCTCTTGAAGATATGGATAAGCTTGTCTACACAATGTCTGATTTCCAGGAAGCTTTGAAAATTGTGCAACCTTCATTAAAAAGAGAGGGCTTCTCATCCATTCCCGATGAGAAATGGGAAGATGTTGGCGGCCTTGATTATTTAAGGAAGGAGTTTAAAAATAGAATAATAAGGCCGATAAAATATCCTGAGGTTTATCAGGCATCTAGGTTTGCAAATCAGACGGGAATTTTGCTTTTTGGGCCCCCTGGTTGTGGTAAAACTCTTATTGCCAAAGCTGTTGCCAATGAGGCAGGAGTTAATTTTATTCATATTAAGGGGCCTGAGCTCTTAAATAAATTTGTTGGAGAAAGTGAGCGAGAAGTTCGACTGCAGTTTAGTCGGGCAAGGGCATGCTCACCCTGTATATTATTTTTTGATGAGGTGGATGCTTTGGCAACCAAACGTGGTGCAGAAGGTGGATCAGGCATTGAACGAGTAGTGGATCAGTTACTAATTGAGCTAGACGGTGCGGGGAAACGCCAAAATGTTTTTGTCATTGGTGCAACAAATAGGCCTGATAGGATGGATGAGGCTCTCCTCCGTCCTGGTAGATTTGGTAAACTACTTTACGTTCCTCTGCCAAGCGCTGACCAGCGGTTTTCAATATTGAAAGCTCATTTAAGGAAGGAGCCTGTTGATCCTACTGTGGATCTGAGAGCCATAGCTGAAGCGTGTGAAAATTTTAGTGGTGCAGACCTTGCTGAATTGGTGGATGAAACAACTCGTGCTGCTCTTGATGAGAAATTCACCCCAGTTGAAGAAGCTTTGAACTCAGTTGAAGCTTCTAGTGATTATACTTGCAAGCCAAGACATTTTGATATAGCACTTAGTAATGTCTTTCCCTCTGTGTCTCCGGCGAAAAGGCGTAGGTATGAGCGCTTGGCAAAGCGTTTTAAAGCATCACGAGGATCATGA 2376 0.4684 MGRRNGGRSLHGTLRRRLESCKSSHSTVDDIVNHLRSTYPDYQRTKHQALTRLVQQVLEPRSKHATKVSAKRSGHDGDEESGRSALRKRQKRVDEGETQGSASSSSASSLSASGSSSSEDDDGSTVSVSTSEDAKYREKYEPAVDLMKTMLRKAYTPTKDDSARKMKHVVQDKNVEMEVANSDKATNEICAKNGGGGKVKAALNLKDGGGSFVKVKAGPRLSDLGGMKDLLETLVQEVIVPWYYPELPRKLCRTPTTGILLHGPPGCGKTTLAHAIANATRVPFYPISATELVSGVSGASEENIRELFAKAHRTAPSIVFIDEIDSIASKRDNLQREMEKRIVTQLLACMDQSSRCMQSANDSDSSNVNPSYVLVIGATNRPDALDSALRRPGRVHDESSREHILSLLTRNLPLQGSLDLKDIARSTPGYVGADLAALITGACNLAMKRIISKRIGKHETIDLEDWWRWGEPWPLEDMDKLVYTMSDFQEALKIVQPSLKREGFSSIPDEKWEDVGGLDYLRKEFKNRIIRPIKYPEVYQASRFANQTGILLFGPPGCGKTLIAKAVANEAGVNFIHIKGPELLNKFVGESEREVRLQFSRARACSPCILFFDEVDALATKRGAEGGSGIERVVDQLLIELDGAGKRQNVFVIGATNRPDRMDEALLRPGRFGKLLYVPLPSADQRFSILKAHLRKEPVDPTVDLRAIAEACENFSGADLAELVDETTRAALDEKFTPVEEALNSVEASSDYTCKPRHFDIALSNVFPSVSPAKRRRYERLAKRFKASRGS 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00682 791 Pfam ATPase family associated with various cellular activities (AAA) 550 679 IPR003959 GO:0005524|GO:0016887
Aip04g00682 791 Pfam ATPase family associated with various cellular activities (AAA) 259 396 IPR003959 GO:0005524|GO:0016887
Aip04g00682 791 Gene3D - 402 502 - -
Aip04g00682 791 MobiDBLite consensus disorder prediction 97 131 - -
Aip04g00682 791 Gene3D - 508 779 IPR027417 -
Aip04g00682 791 MobiDBLite consensus disorder prediction 57 135 - -
Aip04g00682 791 ProSitePatterns AAA-protein family signature. 650 668 IPR003960 GO:0005524|GO:0016887
Aip04g00682 791 CDD AAA 251 394 - -
Aip04g00682 791 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 30 784 - -
Aip04g00682 791 Gene3D - 681 764 - -
Aip04g00682 791 Pfam AAA+ lid domain 703 741 IPR041569 -
Aip04g00682 791 Pfam AAA+ lid domain 418 456 IPR041569 -
Aip04g00682 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 784 IPR027417 -
Aip04g00682 791 ProSitePatterns AAA-protein family signature. 373 391 IPR003960 GO:0005524|GO:0016887
Aip04g00682 791 MobiDBLite consensus disorder prediction 64 96 - -
Aip04g00682 791 Gene3D - 210 401 IPR027417 -
Aip04g00682 791 PANTHER AAA-FAMILY ATPASE 30 784 - -
Aip04g00682 791 MobiDBLite consensus disorder prediction 1 26 - -
Aip04g00682 791 CDD AAA 537 680 - -
Aip04g00682 791 Pfam Nucleolin binding domain 13 59 IPR031996 -
Aip04g00682 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 503 IPR027417 -
Aip04g00682 791 SMART AAA_5 546 682 IPR003593 -
Aip04g00682 791 SMART AAA_5 255 401 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00682 Aip-Chr4 8487632 8492047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00682 487 786 Calmodulin-binding Proteins AT3G56690 43.137 4.60e-68 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00682 K14571 - gmx:100809594 867.455