Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00645 ATGGACCTCTTAGCCGCCGCCACCGCCGCCGCCGCCGATGGCGACAACTTCCCGGTCCCTGACCACGTCGCCCCATTCCCCGATTCCGGCGACCTCCTCTACGCCGCCATTCCCACATCCCTCCGCAGCAACAACCCCCAAAAGCTCCGCCCAATCCGCTCCGTCGCTGCCGCTAGAGCATCCTCTTTCCACCGTAACGGCCAGCTTCCAGAACCTCCCGATACCGGTGGTTCCCCTTCGGTTGAAGAAGATCGGCTTGGTTCCGGGTCGGGTCACGATGACGGGCGCACTGTTCCGTTGTGTCAGGAATCTGGCTCATCTTTGGATGATGATGATGGTAATGACATTGAAAATTCATCTGGGAGTGGCAAACACCCAGGCATGCCAAAGCGAAAGAGGAAGATGGAGAGAAGACTCGAAGATTTCGTGGAGAATATGGTAAAGAAGGTGATGGAAAAGCAAGACCAGATGCATAAACAGTTAGTGGACATGATTGAAAAGAAGGAGAAGGAAAGAGTAATGAGAGAAGAAGCTTGGAAGCAGCAAGAGATCGAGAGAATAAGGAAGGACGAAGAGGCCAGAACCCAAGAGAGGTCACGAAATTTAGCCCTCATATCTGTCATCCAAAATCTGCTTGGCCATGAGATTCAAATCCCGCAACCGGCAGAGGTAAGCAGCAAAGGAGAAGAGGACGAACCGGGACACGAAGGCGAGGAAGCGAATGCTCAAAAGAGTCTCGGCGTCAGTGGTGAGGGAAGTAACAACAGGTGGCCTGATGTTGAAGTTCAAGCGCTGATAACCTTGAGAACTTCAATGGAGCAGAAATTTCATCTTATGGGATCCAAGGTATCAATATGGGAGGAGATATCTGAAGCAATGAATAAAATGGGATACCACCGTTCTGCAAAGAAGTGCAAGGAAAAATGGGAGAACATCAACAAGTACTATAAAAGGACGATAGGGAGTGGCAAGAAGCGGCGTCAAAATAGTAAATCCTGCCCTTACTTTAATGAGTTGGATGTTCTATATAGCAATGGTCTCCTCAATCTTGGAAATCCCTTGAGCAGTAGTACCAATGATGTGTCCAAGATTGAAAAGGAGGAAAATGAAACTTGA 1116 0.4946 MDLLAAATAAAADGDNFPVPDHVAPFPDSGDLLYAAIPTSLRSNNPQKLRPIRSVAAARASSFHRNGQLPEPPDTGGSPSVEEDRLGSGSGHDDGRTVPLCQESGSSLDDDDGNDIENSSGSGKHPGMPKRKRKMERRLEDFVENMVKKVMEKQDQMHKQLVDMIEKKEKERVMREEAWKQQEIERIRKDEEARTQERSRNLALISVIQNLLGHEIQIPQPAEVSSKGEEDEPGHEGEEANAQKSLGVSGEGSNNRWPDVEVQALITLRTSMEQKFHLMGSKVSIWEEISEAMNKMGYHRSAKKCKEKWENINKYYKRTIGSGKKRRQNSKSCPYFNELDVLYSNGLLNLGNPLSSSTNDVSKIEKEENET 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00645 371 CDD GT1 255 319 - -
Aip04g00645 371 Pfam Myb/SANT-like DNA-binding domain 255 341 IPR044822 -
Aip04g00645 371 Gene3D - 257 318 - -
Aip04g00645 371 ProSiteProfiles Myb-like domain profile. 249 313 IPR001005 -
Aip04g00645 371 SMART sant 253 315 IPR001005 -
Aip04g00645 371 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 19 369 - -
Aip04g00645 371 MobiDBLite consensus disorder prediction 55 134 - -
Aip04g00645 371 PANTHER - 19 369 - -
Aip04g00645 371 Coils Coil 151 171 - -
Aip04g00645 371 MobiDBLite consensus disorder prediction 225 239 - -
Aip04g00645 371 MobiDBLite consensus disorder prediction 1 23 - -
Aip04g00645 371 MobiDBLite consensus disorder prediction 222 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00645 Aip-Chr4 7812357 7814156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00645 130 343 Trihelix Transcription Factor Family AT5G47660 45.045 1.39e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip04g00645 Myb_DNA-bind_4 1.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00645 - - aip:107638726 711.064