Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00643 ATGGCTGAATCGGACAACGAGTCAGGAGGACAAGGAGGGAACACTAGCGAGTTCAGGGAGCAGGACAGGTTCCTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCGAAAGAGGCTAAGGAGACGGTGCAGGAGTGTGTGTCGGAGTTCATAAGCTTCATAACGGGTGAAGCCTCCGATAAGTGCCAGAAGGAGAAACGCAAGACCATCAACGGCGACGATCTGCTGTGGGCCATGACTACCCTTGGATTTGAGGAGTACGTGGAGCCTCTTAAGGTGTATCTACACAAGTATAGGGAGATGGAGGGTGAGAGGACTGCTTTGATTGGAGGGACTAGGCAGCATGCTGGTGCTGATCAGAGCAACGACGGTGGTGCTGGTGGTGGTGGCGGGATGGTGCCATCACATATCATGATGATGATGGGGCATCAGCATCAGCATCAGTCTCATGGACACATGTTTGGATCTGGTGGAGGCACTGGATCAGCATCTTCTCGAAGGATCACTAGGTAG 540 0.537 MAESDNESGGQGGNTSEFREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKVYLHKYREMEGERTALIGGTRQHAGADQSNDGGAGGGGGMVPSHIMMMMGHQHQHQSHGHMFGSGGGTGSASSRRITR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00643 179 Gene3D Histone, subunit A 12 135 IPR009072 GO:0046982
Aip04g00643 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Aip04g00643 179 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aip04g00643 179 MobiDBLite consensus disorder prediction 158 179 - -
Aip04g00643 179 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Aip04g00643 179 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Aip04g00643 179 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Aip04g00643 179 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 164 - -
Aip04g00643 179 MobiDBLite consensus disorder prediction 1 21 - -
Aip04g00643 179 SUPERFAMILY Histone-fold 21 122 IPR009072 GO:0046982
Aip04g00643 179 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aip04g00643 179 MobiDBLite consensus disorder prediction 122 179 - -
Aip04g00643 179 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00643 Aip-Chr4 7796857 7797396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00643 1 156 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.561 5.65e-73 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aip04g00643 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00643 K08065 - gmx:100778034 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02489 01 124807427 124808209 Aip04g00643 04 7796857 7797396 PCT