Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00630 ATGGGTCGCTCTCGCGGGAATTTTCACCACGCCGATGAGGACCCAAGCCAAAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAAAATTTAGAGCCTGGAGCTGCTGGGCAGGGAGCAAGTGAAGGGAAGAGAGCTTTGTATCACTGTAATTATTGTAATAAAGATATTACAGGGAAAATCCGCATCAAGTGTGCTATGTGCCCTGATTTTGACCTATGTATAGAATGTTTTTCTGTTGGAGCTGAGGTGACACCGCATAAAAGCAGTCACCCTTACAGGGTTATGGATAATTTATCTTTCCCTCTTATTTGTGCTGACTGGAATGCAGATGATGAAATTCTGCTTCTAGAGGGCATTGAAATGTATGGCTTGGGAAACTGGGCAGAAGTTGCTGAGCATGTTGGGACAAAGAACAAAGAATCATGCATAGAACACTATAGGAATATATATTTGAACTCCCCGTTCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAAAAAAGAACTTCTTGCCATGGCGAAAGGACAGGGTGAGGACAAGAAAGGAATTTCCATGGCAGATGGTCTTAAGGAAGAATCTACGTTTTCTCCTTCTAGAGTCAAGGTTGAAGATTCCCATAAAGCTGGTTCCTCTGGCCCCAATCAGAAGGCCTCAAATTCAGCCCGTGGAAAAGACGGCCTTGGTGTAGTTAAATTGGAAGATTCTCAAGTAGACAGGAATTTTGGTGGAAAGAAACCAAATTCCTCAGGAAATGAAGGTCCTTCATTGGTAGAATCCAGTGGTTATAATTCAAAAAGACAGGAATTTGATCCGGAATATGATAATGATGCTGAACAACTACTTGCTGAAATGGAATTTAAGGACGCTGACACCGACGATGAGAGAGAGATAAAACTACGTGTCTTACGTATCTATGCAAAAAGGCTTGATGAAAGAAAGCGTAGAAAGGATTTCATTCTTGAAAGAAATTTGTTATACCCAAATTCATTCGAGAAGGATTTAACACCTGAGGAGAAGGCGATATGTAGGAGATATGACATTTTCATGCGCTTTCATAAAAAGGAAGAGCACGAGGAATTGCTTCGGACAGTTATTTCTGAACATAGAACTCTTAAAAGACTTCAAGATCTCAAGGAAGCACGGGCTGCTGGTTGCCGTAATGCAGCTGAAGCTGAAAGGTATCTGTTAAATAAGAGAAGAAGGGAAGCTGATGAAAGTGCACGTAGGGTAAAAGAAAGTGCTCAGGGTGGCCCAAGCAATCAGGGGGTTCCAAATGCATTAATGTCTCCAGACTCCGCTGGCAAGGATATGAGTGGCAGGCCTGCAGGACCTGCTACTTCAAGCTCTGTCAATGAAATGGATGTGACAGGATACTATGGGGCTGATTTACTTTCTGAACCTGAGAAACGCTTGTGCTGTGAACTAAGGTTGCCACCAGCCTTATATCTGAAGATGCAAGAGCAGCTATCTCTACAAATACTTAGTGGCACCATCTCTGCAAAATCTGATGCTCATCAATTGTTCAAGATGGATGCTATCAAAATTGACAGGGTCTATGATATGCTCATAAAAAAGGGTATTGCTTCACCTTGA 1605 0.4249 MGRSRGNFHHADEDPSQRSRRKKNAASGENLEPGAAGQGASEGKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSSHPYRVMDNLSFPLICADWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKESCIEHYRNIYLNSPFFPLPDMSHVVGKNKKELLAMAKGQGEDKKGISMADGLKEESTFSPSRVKVEDSHKAGSSGPNQKASNSARGKDGLGVVKLEDSQVDRNFGGKKPNSSGNEGPSLVESSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADTDDEREIKLRVLRIYAKRLDERKRRKDFILERNLLYPNSFEKDLTPEEKAICRRYDIFMRFHKKEEHEELLRTVISEHRTLKRLQDLKEARAAGCRNAAEAERYLLNKRRREADESARRVKESAQGGPSNQGVPNALMSPDSAGKDMSGRPAGPATSSSVNEMDVTGYYGADLLSEPEKRLCCELRLPPALYLKMQEQLSLQILSGTISAKSDAHQLFKMDAIKIDRVYDMLIKKGIASP 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00630 534 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Aip04g00630 534 SMART sant 104 153 IPR001005 -
Aip04g00630 534 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 534 IPR034318 GO:0003713|GO:0006357|GO:0035065
Aip04g00630 534 MobiDBLite consensus disorder prediction 245 268 - -
Aip04g00630 534 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Aip04g00630 534 SUPERFAMILY RING/U-box 48 110 - -
Aip04g00630 534 Pfam Myb-like DNA-binding domain 108 150 IPR001005 -
Aip04g00630 534 MobiDBLite consensus disorder prediction 177 273 - -
Aip04g00630 534 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Aip04g00630 534 Gene3D - 102 153 - -
Aip04g00630 534 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 534 - -
Aip04g00630 534 MobiDBLite consensus disorder prediction 1 27 - -
Aip04g00630 534 Pfam Zinc finger, ZZ type 47 88 IPR000433 GO:0008270
Aip04g00630 534 MobiDBLite consensus disorder prediction 405 455 - -
Aip04g00630 534 MobiDBLite consensus disorder prediction 177 191 - -
Aip04g00630 534 Gene3D - 40 96 IPR043145 -
Aip04g00630 534 Gene3D - 449 533 IPR036388 -
Aip04g00630 534 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Aip04g00630 534 SUPERFAMILY Homeodomain-like 443 531 IPR009057 -
Aip04g00630 534 ProSiteProfiles SWIRM domain profile. 448 534 IPR007526 GO:0005515
Aip04g00630 534 MobiDBLite consensus disorder prediction 417 431 - -
Aip04g00630 534 CDD ZZ_ADA2 48 96 IPR041983 -
Aip04g00630 534 PIRSF Txn_adaptor_ADA2 35 534 IPR016827 GO:0003713|GO:0006357|GO:0035065
Aip04g00630 534 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Aip04g00630 534 CDD SANT 108 150 IPR001005 -
Aip04g00630 534 MobiDBLite consensus disorder prediction 1 39 - -
Aip04g00630 534 SMART zz_5 44 89 IPR000433 GO:0008270
Aip04g00630 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00630 Aip-Chr4 7653330 7658785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00630 1 531 EF-hand Containing Proteins AT3G07740 47.935 6.19e-165 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip04g00630 Myb_DNA-binding 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00630 K11314 - gmx:100811887 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00630 04 7653330 7658785 Aip04g00630 04 7653330 7658785 ECH