Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00626 ATGGAGCAGCAAATCCTTGCAGACCAAAACTTCCCTCTCTTCAAACCCACCTCCAAACCCTCCCGAAACCCTATCTCCACCGTCAACAACAATCACTCAACCTCTAAGCCAGCAGCTGCCGCCGCATCCACCACCACAGATTCCTCCTCTTCCTCCGCCTCCACATTCGCCGAACTCGGCCTTGCCGAATGGGCTGTCAAGACTTGCGGCGAGCTCGGGATGAAGCGTCCCCGGCGTGTTCAGTCGCGCTGCATCCCGCGCGTGCTGGAGGGCCGCCACGTGCTCGGCATCGATGAAACTGGCAGCGGCAAGACCGCCGCCTTCGCCCTCCCGATCCTCCACCGCCTGTCGGAGCACCCGTTCGGTGTGTTCGCGTTGGTGGTGACGCCCACTAGGGAACTGGCGTTCCAGCTAGCGGAGCAGTTCCGCGCCCTCGGTTCCTGCCTCCACCTCCGCATTGCAGTGGTTGTCGGCGGCATGGACATGCTTCGGCAGACCAAGGAGCTTGCTGCCAGGCCCCACGTCGTTATTGCCACGCCGGGGAGGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCCAGTTTTTGCTAGAACTAAGTTCCTTGTCCTGGATGAAGCAGATCGAGTTCTTGATGTCGGTTTTCAGGAGGAATTGAAATTTATCTTTAAGTGCTTACCAGAAAATCGGCAAAATCTGTTCTTTTCTGCAACAACCACAAGTAATCTGCAAAAGTTGTCTGAGCGTTACCAGGATAGACTGTATGTCTACGAGGCATATGAAGGCCTGAAAACTGTAGAAACACTTAAGCAACAGGCTATGTTCATCCCTAAAAAGGTCAAGGAGGTATATTTGATGCATATTTTATCAAAAATGGAAGATATGGACATCCGATCTGCCATTGTATTTATCTCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTGCTTGATCTTGAAGCGGCAGCCCTATATTCATTTAAATCGCAGGCTCAAAGGCTTGAGGCACTTCAACGGTTTAAATCAGGGAAGGTCTCTGTACTGCTAGCAACAGATGTTGCCAGCCGTGGTTTGGATATCCCGACAGTCGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGACTATGTTCATCGTGTTGGTCGTACTGCCAGAGCAGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTGTTCGTGAAATAGAAGCTCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTTCTTTCTATCATGAAAAAGGTTTTCAGTGCCAAAAATGTGGCAGAAATGAAGATGATGGATGATGGATTTGAGGAGAAAGCAAAGGAGAGGAAAAAACAGAAACTGAAAATGCTAGCAGAGAAAGGATTGTTAAATAAAAGAGGTGTTAGTCCTGGAACAGTTCCAGTGTACCATAGTACAAACCTGAAATTGTTGGATAAGAGGATCAAGATAGCTGAGTTGGTGTTAAGGTTTATGATTCTTGGTCTTGGAGTTGTTGCAGCTGTTCTTATTGGAACTGATTCACAAGTGAAGGTGTTTTTCTCCTTTGAGAAGGAAGCTAAATTTACTGATGTTAAGGCTTTGGTATTCTTGGTAGTTGCTAATGGTTTGGCTGCTGGATACTCTTTGATTCAAGGATTCCGTTGTGTTGTGAATTTGGTTAGGGGAAGTGTTCTCTTCAACAAGCCCTTAGCTTGGGCCATTTTCTCTGCTGATCAGATAATGGCATATGTAACAGTTTCAGCAGTGGCGGGTGCAGGGCAATCAGCAGTGTTTGCAAAGGAGGGGCAGCAAGAACTGCAATGGATGAAAGTATGCAACATGTATGAGAAATTCTGCAACCAAGTGGGAGAAGGAGTGGCTAGTGCTGTTGTAGCTTGCATCAGCATGGTGCTCCTCTCTTGCATTTCTTCTTTCACTCTCTTCCGTTTGTATGGTCCTAACAAAACCAAATCTGCTGCTTGcttccttccttcgccgtcagttggtccgtggcaggtgctgagCTTCCCCAACTACAAATTGTTGATCATGTCGGAAAAATTCTCGGCGGCGCTTCGGATTGGGGACCTCAACGATTTCATAGCGCCGTCTCAGGCATGCATAGTATCGCTCAAGGGCTTGAAAGCGAACGCCAACAAGCCCGATTCCGAGGTTTCAGTTGGCAGAAGCAAGCAAGTTCAGTCAGAGCCTGTTAAGATTTCTCTAAAGGATTGTTTGGCATGCAGTGGCTGTGTGACATCTGCGGAGACAGTTATGCTGGAGAAACAAAGTTTGGATGAGTTCTTATCTAATATTAACAAAGGGAAAGCAGTGATTATGTCTGTTTCTCCCCAGTCAAGGGCCTCCCTTGCAGCTCATTTTGGCATTTCTCCCCTTCAGGTTTTCAAGAAGCTGACAAGATTTTTCAAATCATTGGGAGTGAAGGCAATTTTCGATACAAGTTGCAGTAGAGATTTAACCCTTATTGAATCTTGTATGGAGTTCATGTCAAGGTACAAACAGAGTCAACTGTCTGATGATGAGAAGAATAAGTCGAGCCTACCTATGATTGCTTCTGCATGCCCAGGTTGGATATGCTATGCAGAGAAGCAACTTGGGTCGTTTGTTTTACCAAATATTTCAAAAGTAAAGAGTCCACAACAAACAATTGGAGCCATCATAAAACACTATTTATGCCAAGATATGGGGCTTAGGCCTGAAGAAATTTACCACGTCACTGTTATGCCTTGTTATGATAAAAAGCTTGAGGCTGCTAGGGATGACTTCGTTTTCCAACCGGAGTCCCATGATGAAGGGAGTGGGAATGAAGATAACATGATGACAGAGGTCGATTCGGTACTCACAACAGGAGAAGTTTTGGAATTGATTCAGTTAAAAGAAGTTGATTTTCAAAGCTTAGAAGAATCTCCTTTGGATAGACCGTTGACAAATATTAATGAAGAAGGTTACCTTTATGGGGTCCGTGGAAGCTCTGGAGGTTATGCAGAAACAATTTTCCGATATGCCGCTAGAACTTTTTTTGGAAGACAGATTGATGGCCCTCTGAACTTTAGAAATATACGGAATTCAGATTTTCAGGAAGTTACACTTGAGGTGGAGGGGAAAACAGTGTTGAGATTTGCTCTCTGTTATGGTTTCCGAAACCTGCAAAATGTTGTCAGAAAAGTTAAAACTGGTAAATGTGACTATCATTTCCTGGAGATCATGGCATGCCCGTCAGGTTGCTTGAATGGCGGAGGTCAAATTAAACCAAAGAAAGGGCAATCTCCCAAAGAATTGAGCCAGTTGTTGGAAACTATTTACATGGAAAATATTCGTGTAGCAGAACCATTCGATAACCCCATCGTAAGAGGCTTATATGACAAGTGGCTCGAGCAGCCTGGCTCCGATAAAGCCAAGAGACACCTTTACACGCAGTACCATCCCGTCGAGAAAAGCATTACCTCTCAATTGCATAATTGGTGA 3519 0.4467 MEQQILADQNFPLFKPTSKPSRNPISTVNNNHSTSKPAAAAASTTTDSSSSSASTFAELGLAEWAVKTCGELGMKRPRRVQSRCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFALVVTPTRELAFQLAEQFRALGSCLHLRIAVVVGGMDMLRQTKELAARPHVVIATPGRIKALLENPDIPPVFARTKFLVLDEADRVLDVGFQEELKFIFKCLPENRQNLFFSATTTSNLQKLSERYQDRLYVYEAYEGLKTVETLKQQAMFIPKKVKEVYLMHILSKMEDMDIRSAIVFISTCRDCHRLSLMLEVLDLEAAALYSFKSQAQRLEALQRFKSGKVSVLLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSLVTQNDVELVREIEALIERQLEMIEYKENEVLSIMKKVFSAKNVAEMKMMDDGFEEKAKERKKQKLKMLAEKGLLNKRGVSPGTVPVYHSTNLKLLDKRIKIAELVLRFMILGLGVVAAVLIGTDSQVKVFFSFEKEAKFTDVKALVFLVVANGLAAGYSLIQGFRCVVNLVRGSVLFNKPLAWAIFSADQIMAYVTVSAVAGAGQSAVFAKEGQQELQWMKVCNMYEKFCNQVGEGVASAVVACISMVLLSCISSFTLFRLYGPNKTKSAACFLPSPSVGPWQVLSFPNYKLLIMSEKFSAALRIGDLNDFIAPSQACIVSLKGLKANANKPDSEVSVGRSKQVQSEPVKISLKDCLACSGCVTSAETVMLEKQSLDEFLSNINKGKAVIMSVSPQSRASLAAHFGISPLQVFKKLTRFFKSLGVKAIFDTSCSRDLTLIESCMEFMSRYKQSQLSDDEKNKSSLPMIASACPGWICYAEKQLGSFVLPNISKVKSPQQTIGAIIKHYLCQDMGLRPEEIYHVTVMPCYDKKLEAARDDFVFQPESHDEGSGNEDNMMTEVDSVLTTGEVLELIQLKEVDFQSLEESPLDRPLTNINEEGYLYGVRGSSGGYAETIFRYAARTFFGRQIDGPLNFRNIRNSDFQEVTLEVEGKTVLRFALCYGFRNLQNVVRKVKTGKCDYHFLEIMACPSGCLNGGGQIKPKKGQSPKELSQLLETIYMENIRVAEPFDNPIVRGLYDKWLEQPGSDKAKRHLYTQYHPVEKSITSQLHNW 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00626 1172 Pfam Casparian strip membrane protein domain 497 645 IPR006702 -
Aip04g00626 1172 Pfam Helicase conserved C-terminal domain 294 392 IPR001650 -
Aip04g00626 1172 Pfam Iron hydrogenase small subunit 1121 1160 IPR003149 -
Aip04g00626 1172 Coils Coil 409 429 - -
Aip04g00626 1172 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 54 82 IPR014014 GO:0003724
Aip04g00626 1172 Gene3D - 19 257 IPR027417 -
Aip04g00626 1172 MobiDBLite consensus disorder prediction 7 51 - -
Aip04g00626 1172 Gene3D - 264 480 IPR027417 -
Aip04g00626 1172 SMART Fe_hyd_SSU_2 1105 1162 IPR003149 -
Aip04g00626 1172 SMART ultradead3 73 272 IPR014001 -
Aip04g00626 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 412 IPR027417 -
Aip04g00626 1172 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 504 656 IPR006459 -
Aip04g00626 1172 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 203 211 IPR000629 -
Aip04g00626 1172 SMART helicmild6 311 392 IPR001650 -
Aip04g00626 1172 CDD DEADc_DDX49 58 258 - -
Aip04g00626 1172 SUPERFAMILY Fe-only hydrogenase 755 1159 IPR009016 -
Aip04g00626 1172 PANTHER RNA HELICASE 53 475 - -
Aip04g00626 1172 Pfam DEAD/DEAH box helicase 79 246 IPR011545 GO:0003676|GO:0005524
Aip04g00626 1172 CDD SF2_C_DEAD 269 401 - -
Aip04g00626 1172 Pfam Iron only hydrogenase large subunit, C-terminal domain 787 1097 IPR004108 -
Aip04g00626 1172 Gene3D - 832 1154 - -
Aip04g00626 1172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 85 257 IPR014001 -
Aip04g00626 1172 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 53 475 - -
Aip04g00626 1172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 431 IPR001650 -
Aip04g00626 1172 Gene3D - 787 1126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00626 Aip-Chr4 7583462 7601529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00626 54 421 Eukaryotic Initiation Factors Gene Family AT3G19760 29.570 4.86e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00626 - - gmx:100793974 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02506 01 125077128 125078979 Aip04g00626 04 7583462 7601529 PCT