Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00615 ATGAAGGATCGGACCACCGGGCGTGCCCGTGGCTTCGGCTTTGTTGTTTTTGCTGATGCTTCTGTTGCTGAACGAGTTGTTATGGAGAAACATGTCATTGATGGCAGAACTGTCGAAGCAAAAAAAGCTGTCCCCAGAGATGACCAGAATGTTTTGAACAAAAGCAACAGCAGTAATCACAGTTCACCTGGTCCTACTCCATCCCGTACAAAGAAGATATTTGTCGGAGGTCTAGCATCCACGGTTACTGAGAGCGACTTCAAGAAGTACTTTGATCAATTCGGAATAATTACAGACGTGGTTGTGATGTATGATCATAACACCCAAAGGCCTAGAGGTTTTGGATTCATCACCTATGATTCGGAGGAAGCAGTTGAGAAAGTTCTATACAAGTCTTTCCATGAATTGAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTACCAAAGGAATTATCTCCAAGTCCAAGCAGAGGCCAGTTAGGTGGATATAGTTATGGTCTTAGTAGAGTAAGTAGCTGCCCCAATGGTTTCATTCAGGGATTTAATGCAAGTGTAGTTGGAAGGAATGGACTTAAATTAGATGGAAGATCAAATGCTGTTACTGCTGGCCATAGTGAATATCCTCTTTTCGGCCATAGTTATGGAACAGGACTCAACTTCGAGCCACCATTGACCCAAAATGGAACTTCAAACTTTACTTCTACCTTCATAGGGCGAACAATGAACTCTTCGTTCGGTGGTAGTCCAAGCAGGTACAGCAATGCCATAGGTTATGCTGGTGCAAATGTAGGCAATAATTCGGCCATGAGTTCTACAAGTCAGAACTTGTGGGGAAATGGGAATCTTAACTATGCTTCTAACCTTACAAATTCTGATTCTCTTTCTGGTTATCGGAACGAAAATTCAAGCATGGCTTCTTTTGGTAGTATAGGACCACTTTGGAGTTCCTCACTTGGAACAGATCAAACTGGAATTATCGGCTCCGGATATGGTAAGGGCAGTCTAAGTAGCTCTGGAGATGTGAATTTAGGGTCGAAAACAGTAGGTTATGGAAAAAATAGCGATAACATTGTTACGTCAGGTTCTTCATATTCCTTACCAAATGGCAGTTATGATGAGGCATACAATGTTGCTTATGATGCTGGGTCATTTTACGGGGACAGTATGTGGAGAACATCCCCTTCAGAATTAGAGGATTCCGGCTCTCTTGGCTTTGGCATTGACCATGCTGTTTCAGGCTTAATGCGCAAAAGCTCTGGCAGCCACATTGGAGCTTATGCTGTTGCCAACACTCAACCAAATAGAGGAATTGTTGCCTAG 1320 0.4311 MKDRTTGRARGFGFVVFADASVAERVVMEKHVIDGRTVEAKKAVPRDDQNVLNKSNSSNHSSPGPTPSRTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLYKSFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYGLSRVSSCPNGFIQGFNASVVGRNGLKLDGRSNAVTAGHSEYPLFGHSYGTGLNFEPPLTQNGTSNFTSTFIGRTMNSSFGGSPSRYSNAIGYAGANVGNNSAMSSTSQNLWGNGNLNYASNLTNSDSLSGYRNENSSMASFGSIGPLWSSSLGTDQTGIIGSGYGKGSLSSSGDVNLGSKTVGYGKNSDNIVTSGSSYSLPNGSYDEAYNVAYDAGSFYGDSMWRTSPSELEDSGSLGFGIDHAVSGLMRKSSGSHIGAYAVANTQPNRGIVA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00615 439 Gene3D - 49 166 IPR012677 -
Aip04g00615 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 45 IPR000504 GO:0003723
Aip04g00615 439 Gene3D - 1 48 IPR012677 -
Aip04g00615 439 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 439 - -
Aip04g00615 439 MobiDBLite consensus disorder prediction 49 68 - -
Aip04g00615 439 CDD RRM2_DAZAP1 69 148 IPR034131 GO:0003723
Aip04g00615 439 SUPERFAMILY RNA-binding domain, RBD 61 167 IPR035979 GO:0003676
Aip04g00615 439 SUPERFAMILY RNA-binding domain, RBD 1 61 IPR035979 GO:0003676
Aip04g00615 439 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 439 - -
Aip04g00615 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 148 IPR000504 GO:0003723
Aip04g00615 439 SMART rrm1_1 72 144 IPR000504 GO:0003723
Aip04g00615 439 MobiDBLite consensus disorder prediction 44 71 - -
Aip04g00615 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00615 Aip-Chr4 7510354 7513110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00615 7 150 Eukaryotic Initiation Factors Gene Family AT3G16380 28.378 1.93e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00615 K14411 - cit:102621909 529.25