Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00613 ATGGTTTCGCTGGAGGAATCTGGCTCCAACAACACTAACCGTTTTCCGTTGGAGAGGAGCTACCACTCCGTGTCGGCGATTTCTCCCAAAACGCACCGTCGTATAGGGAGGTCTATGCGAACCATACGCTCCAACTTTTTTCAAGACGATAACAGCAGCAACAGTTGCTACTCTTTTACTGAGAAATCCACGTGCTTATCGGAGAACCTCTCCGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCCTCCAGGAACGTCATCAAGCCTACTTCACCCGTCCCCGATGAGGAACTTCTTGACCTCTCGCATGCCTTCAGTGACTTCTCCGCCTGCAGCAGTGACATCTCCGGTGAGCTCCAGCGCCTCGCATGCTTACCGTCGCCGGAATACGTCCAGAAGAGCAACGACGCTGGCAACGGAGGTAACCAGGAACAGGAGACGGAGCCAGAGCCTTGCGTAGGGTTTTTGCAGAGGGAGAATTTCTCCACGGAGATCATCGAGAGCATCTCGCCGGAGGATCTTCAGCCAACAGTGAAGCTCTGCATCGACGGCCTCCAGTCGCCGTCGATCGCCGTGAAGCGATCGGCAGCCGCCAAGCTCCGAACAGAAACCTCGAAGCAGAACGCAGCGTGTGCGCTTCTCAGCTTAGCGCTTGTGGAGGAGAACAAGAGCTCGATCGGCGCATCCGGCGCGATTCCGCCACTGGTGTCGCTGCTGATGAACGGCTCCAGCCGCGGGAAGAAGGACGCGCTGACGACGCTGTACAAGCTGTGCTCGGTGAAGCAGAACAAGGAGCGGGCAGTGAGCGCCGGCGCGGTGAGGCCTCTGGTAGAGCTTGTGGCGGAACAGGGGTCTGGCATGGCGGAGAAGGCTATGGTAGTGCTGAACAGCCTAGCAGCTATTCAAGAAGGAAAAGACGCAATCGTGGAGGAAGGTGGAATCGCTGCTCTGGTTGAAGCGATCGAAGATGGTTCGATGAAGGGAAAGGAGTTCGCCGTATTAACGCTTCTTCAGCTGTGTAGTGAGAGTGCTATCAACCGAGCGTTTCTTGTGAGGGAAGGCGCCATTCCTCCTCTCGTTGCTCTTTCCCAGTCCGGTACTGCTCGAGCTAAGCACAAGGCTGAAACACTCCTTCGATATTTGAGAGAATCAAGACAAGAAGCATCGTCTTCAAGTTCTTAA 1185 0.5595 MVSLEESGSNNTNRFPLERSYHSVSAISPKTHRRIGRSMRTIRSNFFQDDNSSNSCYSFTEKSTCLSENLSDSVVDLRLGELASRNVIKPTSPVPDEELLDLSHAFSDFSACSSDISGELQRLACLPSPEYVQKSNDAGNGGNQEQETEPEPCVGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSPSIAVKRSAAAKLRTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLMNGSSRGKKDALTTLYKLCSVKQNKERAVSAGAVRPLVELVAEQGSGMAEKAMVVLNSLAAIQEGKDAIVEEGGIAALVEAIEDGSMKGKEFAVLTLLQLCSESAINRAFLVREGAIPPLVALSQSGTARAKHKAETLLRYLRESRQEASSSSS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00613 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 231 273 IPR000225 GO:0005515
Aip04g00613 394 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 8 202 - -
Aip04g00613 394 PANTHER U BOX DOMAIN-CONTAINING 203 391 - -
Aip04g00613 394 PANTHER U BOX DOMAIN-CONTAINING 8 202 - -
Aip04g00613 394 SUPERFAMILY ARM repeat 176 388 IPR016024 -
Aip04g00613 394 Pfam Armadillo/beta-catenin-like repeat 222 260 IPR000225 GO:0005515
Aip04g00613 394 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 203 391 - -
Aip04g00613 394 SMART arm_5 302 342 IPR000225 GO:0005515
Aip04g00613 394 SMART arm_5 220 260 IPR000225 GO:0005515
Aip04g00613 394 SMART arm_5 261 301 IPR000225 GO:0005515
Aip04g00613 394 SMART arm_5 344 384 IPR000225 GO:0005515
Aip04g00613 394 Gene3D - 128 393 IPR011989 -
Aip04g00613 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 272 314 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00613 204 387 U-box Gene Family AT5G67340 54.348 2.64e-52 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00613 - - ccaj:109803826 546.199