Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00582 ATGCCCATCACTCAAACCACGACTGCAGATAGTGTTTTCCAACTCCAACGCGCCAACCACTCCTCCAAGCGGAAGCTCGATGACTACGGTGATGAATATGGGGCAGATGCCGGCGCGGATTTCGCCGGCGGCGACCCCGAGGTCGCCTATGCAGCGGGATTCCTTGCCGGGATTAAGCGAGAAGAGACGAAAAACGCCTCAAATTCGCGGTACCGTGGCGCGGATGCTAGGGTTTCGTCGTCGACTCCTTCTTCGTCGCGAGCCGCTCAGTTTCGGAGCGGGTCGAGGTCCGGGTCGCGGTTACAGTTCTTCGTCCGAATGATGTCGCGAGGGAACACTGTGGTGATGCAAGCATCTCCTCACGATACCGTGAAATCGATCCATGAGAGAATCATGGTATTGACCGGTATACCTGTTTTCGAGCAGGGTTTAACATACAGAGGTAAACAACTTCAGTGGGAGAACACTCTTCAAGAGTGTGGGGTTCAGAACGACGCAAACCTCCACCTGGTTGGTCGCATGAGGAGTACGGAGCACCCTCAGGCGTGGCAGGTTCTTGAAAACATGGTCAGTCTTGTTTTCAGGCTCTGTAGAGGCGAAATTGTTCACGAGGCTACCAAGGTGATCAAGAGCCTCATCACCAGTTACATGAACATGGCGCCCAAGGTTGATGATGCTACAGCATCTTATTTCCACATTTTCGTCGCCTCGAATGCCCCTTCCATGCTGTGTGCGAGTGTGGTGTTGGAGTTGTGTAGTTTGCTTATGAGGGTTGGGTGTGATGATCCTCTGTATCTGCATTGCCGGAATACTTTGGGGTCTATGTTAGAGAGTGCTGGTTGTTGCCATGTTTATGCAGGTAAGCATGGTAAAGGTGGAGGGTCTATTTTGTTGCAGGATATCTGCCCCTTTGTTCGCGAGCTTTCGAATAGGTTGTTGAGGGATTTGGAGTTATGCATCCAGCGGCCCAACAGTTCAGGGCCATTGCAGACCGATGTTTCGGACTTTGCAGCTTTCTTGACCCCTTTGAGGAAAGGAATTACCCAATTGCAAGCTATGAGGGGTATGGGGTTGGATGAAAAGTGCCATGAGGGGATCTTGCTTGCAGAAGAGGTGGATTACCTTCACCTTATATTTATTCAGATGTTGGAGAAAATGGAACAATGCCTTCGTTCTATGCAGGAATTCTTGTCTGACAAACTAAGACGGGATCGGGATGTGGGTTTGACGTATTCTGGATGTTCTCAATATCTTTCTATCTTGAAGGAATTGTATCAAATCTCGAAGCTATATGATGGGGCGGAGGAAAAATTTTGGAAGGTTTTGATGAATCAACGAAGTATGCTTTGTATACTTGTCATCCAATATGCAAAGAGAAGTGATGATCACCAGTGGATTCTTGATCACAGATCTGTGACTAATTTTGAGGTGAGGAGGCATCTGGCAATGCTGTTGTTTCCTGATGTCAAAGAAGACTATGAGGAGTTACATGAGATGCTTATTGATAGGTCTCAATTATTGGCCGAATCCTACGAGTATATAGCACAAGCAAAGCCTGCCTCTCTGCATGCTGGGCTATTTATGGAATTCAAAAACGAGGAAGCTACTGGACCGGGTGTGCTGAGGGAGTGGTTTCTTTTGGTGTGTCAAGCAATATTTAATCCAGAAAATGCTCTCTTTGTAGCATGCCCAAATGATTGCAGGAGATTTTACCCTAATCCTGGTACATCTTAA 1734 0.4781 MPITQTTTADSVFQLQRANHSSKRKLDDYGDEYGADAGADFAGGDPEVAYAAGFLAGIKREETKNASNSRYRGADARVSSSTPSSSRAAQFRSGSRSGSRLQFFVRMMSRGNTVVMQASPHDTVKSIHERIMVLTGIPVFEQGLTYRGKQLQWENTLQECGVQNDANLHLVGRMRSTEHPQAWQVLENMVSLVFRLCRGEIVHEATKVIKSLITSYMNMAPKVDDATASYFHIFVASNAPSMLCASVVLELCSLLMRVGCDDPLYLHCRNTLGSMLESAGCCHVYAGKHGKGGGSILLQDICPFVRELSNRLLRDLELCIQRPNSSGPLQTDVSDFAAFLTPLRKGITQLQAMRGMGLDEKCHEGILLAEEVDYLHLIFIQMLEKMEQCLRSMQEFLSDKLRRDRDVGLTYSGCSQYLSILKELYQISKLYDGAEEKFWKVLMNQRSMLCILVIQYAKRSDDHQWILDHRSVTNFEVRRHLAMLLFPDVKEDYEELHEMLIDRSQLLAESYEYIAQAKPASLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPENALFVACPNDCRRFYPNPGTS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00582 577 MobiDBLite consensus disorder prediction 65 94 - -
Aip04g00582 577 ProSiteProfiles HECT domain profile. 518 577 IPR000569 GO:0004842
Aip04g00582 577 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 87 246 - -
Aip04g00582 577 ProSiteProfiles Ubiquitin domain profile. 101 177 IPR000626 GO:0005515
Aip04g00582 577 SUPERFAMILY Hect, E3 ligase catalytic domain 493 574 IPR035983 GO:0004842
Aip04g00582 577 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 87 246 - -
Aip04g00582 577 Pfam Ubiquitin family 104 175 IPR000626 GO:0005515
Aip04g00582 577 Gene3D - 95 199 - -
Aip04g00582 577 MobiDBLite consensus disorder prediction 69 94 - -
Aip04g00582 577 Gene3D Hect, E3 ligase catalytic domains 456 577 - -
Aip04g00582 577 SUPERFAMILY Ubiquitin-like 102 189 IPR029071 -
Aip04g00582 577 PRINTS Ubiquitin signature 112 132 IPR019956 -
Aip04g00582 577 PRINTS Ubiquitin signature 154 175 IPR019956 -
Aip04g00582 577 PRINTS Ubiquitin signature 133 153 IPR019956 -
Aip04g00582 577 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 244 574 - -
Aip04g00582 577 SMART ubq_7 101 173 IPR000626 GO:0005515
Aip04g00582 577 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 244 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00582 Aip-Chr4 6977578 6979422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00582 101 175 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.667 5.28e-09 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02522 01 125339355 125344220 Aip04g00582 04 6977578 6979422 PCT