Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00574 ATGAAGCAATTAAACCTTGAATGGTGGAAGGTACTCACGGATCTTTGCAATCGTCTATGCTCACCGTACCATGATGAAGTTTTGTATCAGGGCACTAGGTTGCAAGTTTCAATCCCTAAATCCTTGGTGAGCAAGTGGCGGGGTGTCTTGGTTCAGTTTCAAATGTATATTATGACCAACTTCGTTGTTGTTGACAACCAAAAGGGTAACATATCAAGAGGGAAGTATTTATTATTCTTCAGTCATAGGACAATCGTCAGTCATGTCGAGAATCCCAGTTTTCTGCTAAATGCTTTCCGATTCAAAACCATCCGTGAGTTACTATATGCTGAGAGGATCGATGACTCTGCATTGTTTGACATGATTGGTGAAGTAGTTGGTAAAGAAGATCCAAAAGAGTTTATCACCAGCAAAGGAAAGGAGACTAAACGACTGGCTATTATCTTGAAGGGCCTCAAAAACAATAGGATTGGGTGCACTATATTTGGTGAAATGGTTGACCAGCTACTTCAACACATGCAAGATGGAAGGGTTGAGCCACTAATAGTTGTGGTCCAGTATTTTAAGGCAACGAGATGGAATGGCAAGACATCTATCCAAAGCCATTTTGACATGTCACAGCTGCACATAGACCCGACCTTAAAGATGTTGCTGAATTTAGGAGTAGGGGCTGAAGAGCTCAAACAAGGTGCTGTGTCAGTGAAAATAGTTGAAGAAGTTCTTATCCAATATGAGGAAGGTCCAGCTTGGATTGCTGCAACCATTGTTGCGATTAATGTTACAAAGGATGATTGGTTCTATAAATCATGTAGAAAATGTCCAAAGAAAGTAGAAATTCCTATTGAAAACAGATATGAATGTGGGAAGTGTGGCCATACACATGGATCTACAGCCCTAAGGTTCAAAGTCGAGGTGATGGTTTTTGACAGAACCAGTAGCATCTGCTTGCTACTGTGGGACAAGGAAACAAGTATGCTTTGTGGGAAGAGAGCTGAACAGATTATGGAAGACCATGTTATAATGGGAGATGAATATCCCAAAACACTTGATAACATGATGGACAAAAGAGTCCTTTTCAAGATAAATATCAAAGAAGCCAACATTAATCAGTTTGATCATGTGTACATAGTTATGAAAATTTGTGATGATGAGGATATCATTGACAAAAATCTTCCCAAAGAGTTGTTTACTAATCTTCCGAGTAATGTCAGTGAAAATGGCTGCAACAACTATTTGGAAATTTCAGGAAATGTGGCTAATCTTAAAACTGATTGTGATATTGAGTCTTCTATGGATGTCGTGGAGGAGTGCATCTCATCCCTCAAGTACCAAACACCATCTAAAAGAATTACCAATGTATTGAAGAATTCTTCCCCAAGTCTGGATGAACATGAGGAAGAAGGCCAGCTGTCAACCAACAGGTTTAGCAGGCAGATGGGAAATAGACAGAAATGTGTTAACCTTGATGCAGATATATGA 1479 0.3962 MKQLNLEWWKVLTDLCNRLCSPYHDEVLYQGTRLQVSIPKSLVSKWRGVLVQFQMYIMTNFVVVDNQKGNISRGKYLLFFSHRTIVSHVENPSFLLNAFRFKTIRELLYAERIDDSALFDMIGEVVGKEDPKEFITSKGKETKRLAIILKGLKNNRIGCTIFGEMVDQLLQHMQDGRVEPLIVVVQYFKATRWNGKTSIQSHFDMSQLHIDPTLKMLLNLGVGAEELKQGAVSVKIVEEVLIQYEEGPAWIAATIVAINVTKDDWFYKSCRKCPKKVEIPIENRYECGKCGHTHGSTALRFKVEVMVFDRTSSICLLLWDKETSMLCGKRAEQIMEDHVIMGDEYPKTLDNMMDKRVLFKINIKEANINQFDHVYIVMKICDDEDIIDKNLPKELFTNLPSNVSENGCNNYLEISGNVANLKTDCDIESSMDVVEECISSLKYQTPSKRITNVLKNSSPSLDEHEEEGQLSTNRFSRQMGNRQKCVNLDADI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00574 492 SUPERFAMILY Nucleic acid-binding proteins 248 381 IPR012340 -
Aip04g00574 492 SUPERFAMILY Nucleic acid-binding proteins 100 215 IPR012340 -
Aip04g00574 492 Gene3D - 96 227 IPR012340 -
Aip04g00574 492 PANTHER BNAC07G49340D PROTEIN 108 441 - -
Aip04g00574 492 Gene3D - 228 389 IPR012340 -
Aip04g00574 492 PANTHER REPLICATION FACTOR A 1, RFA1 108 441 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip04g00574 492 CDD RPA1_DBD_C 246 369 IPR013955 -
Aip04g00574 492 Pfam Replication factor-A C terminal domain 253 373 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00574 Aip-Chr4 6892675 6895799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00574 31 334 Core DNA Replication Machinery Family AT4G19130 21.791 1.23e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00574 - - aip:107635940 827.78