Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00566 ATGATTCTTGGTCTTGGAGTTGTTACAGCTGTTCTTATTGGAACTGATTCACAAGTGAAGGTGGTTTTCTCCTTTGAGAAGGAAGCTAAATTCACTGCTGTTAAGGCTTTGGTATTCTTGGTAGTTGCTAATGGTTTGGCTACTGGATACTCTTTGATTCAAGGACTTCGTTGTGTTGTGAGTTTGGTTAGGGGAAGTGTTCTCTTCAACAAGCCCTTAGCTTGGGCCATTTTCTCTGCTGATCAGAATGACCACAAGAGAGGATGTAACTGTAAGAAATCATTCTGCCAAAAGAAATACTGTAAATGCTTTCAGGCTGGTGTTGGATGTGACACGTGTTCTAATTCTATAGGAGTAGAAACCCAACTAGAAGTAGAAATAGAGGCATGTGGTAAAGAGTTTGTTGAAAATGCATCACGAAAAATTGAAATTCAGAACTCCCACGGGATGTCTAGTTCATTGAATTTTTCGTTAGAGAGTAAGATGTTTGGGACTCTTTGCTCTCAGCCACTTGAGCATTCTCAAACTGTTTCACACCACGAAACGACTGGAGGCAGAGGCAGAAGTGGATAG 573 0.4101 MILGLGVVTAVLIGTDSQVKVVFSFEKEAKFTAVKALVFLVVANGLATGYSLIQGLRCVVSLVRGSVLFNKPLAWAIFSADQNDHKRGCNCKKSFCQKKYCKCFQAGVGCDTCSNSIGVETQLEVEIEACGKEFVENASRKIEIQNSHGMSSSLNFSLESKMFGTLCSQPLEHSQTVSHHETTGGRGRSG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00566 190 PANTHER CASP-LIKE PROTEIN 2B2 1 82 - -
Aip04g00566 190 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 4 82 IPR006459 -
Aip04g00566 190 Pfam Casparian strip membrane protein domain 3 82 IPR006702 -
Aip04g00566 190 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 1 82 - -
Aip04g00566 190 SMART CXC_2 84 122 IPR033467 -
Aip04g00566 190 ProSiteProfiles CRC domain profile. 1 124 IPR005172 -
Aip04g00566 190 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 86 114 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00566 Aip-Chr4 6844887 6846310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00566 85 118 CPP Transcription Factor Family AT4G14770 60.000 1.22e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aip04g00566 DUF588 9.6e-18 CL0396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00566 - - aip:107639576 277.715