Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00549 ATGGGTGATGCAATTGCAAACAAACAAAGAAGAAACTCAGAGAGGGATAGAAAACAAAGAAACCCACCTCTGATTCCGCGTGAGCGAGGAGAAGTAGCCACGAATTTCGTAGGTAGAAGTGTAGAACGCAGATCCTTTCACAGTTCACCGTTTCAACGCAAATCCTTTCACAGTTTCACCCTTTCAACGCGTTCTCTGGTCAGGGTCTCAGCCTCTCATGGAGGAAAAGTCACATCTCTGGACAAATTAACTGCCGCCGGCAGTGACCTGGCACTGAAAAGCCACACTGGATGCCACGCTGGAGTGTCAATCTTGGCGCTAAAAATATGGATGGATGGAACGGCGTCGTTTCATGGTTTGAAGGTTGAAAACGTTTGGCTCCGTGGAGTTTGCTGCCACTGTGATAGTGTTGTGCGGTCGTTGTTGGTGAAGGAAGGAGAAGCAGTTCATCGTGATCACACGAAGCCTCCTACCCCTTGCCAGCCGCGTCCAATAATGAGTCAACTCGGCGATATTCTTCAGACGGAGCCAAGGACGATTCTCGGATTGTTGACGGAGCAAATGGACGCCGCCGCCGATGGACCGCCGCGCACCAGGACCAGGCGCACCTTCAAGGACCGTTTAGGATTCATCGGCATCGGCTGTTGCGGTGCCACGTGGCGATTCCGTTCTGAGTCCATAACGGTCAGGCACGAAGACCAAGAACAACAGCAACAGCCACAGCAACAGCATCAACAGCACCAACCGCTTCTTCTTGAATCGAATCAGGCTCGAGATCCGAACCGTTTTGGACCTGACTGCGTGGTGTCGCTGATGAGGCTGCTGGAGGAGACCGACGGCGGCGATGCAGAGGTTAGTTCGGCGGCGAAGACATCGGATGAAGATAAGATAAGTGGAAGTGGTGGTGGTGGTGTGGGAAATGATTGGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCGTTCATACCATGTGGTCACACTTTTTGCAGGGTTTGTTCAAGGGAGCTGTGGCTCAACCGAGGCTCTTGTCCCCTTTGCAATCGTTCCATTCTCGAGATTCTCGACATTTTCTGA 1080 0.525 MGDAIANKQRRNSERDRKQRNPPLIPRERGEVATNFVGRSVERRSFHSSPFQRKSFHSFTLSTRSLVRVSASHGGKVTSLDKLTAAGSDLALKSHTGCHAGVSILALKIWMDGTASFHGLKVENVWLRGVCCHCDSVVRSLLVKEGEAVHRDHTKPPTPCQPRPIMSQLGDILQTEPRTILGLLTEQMDAAADGPPRTRTRRTFKDRLGFIGIGCCGATWRFRSESITVRHEDQEQQQQPQQQHQQHQPLLLESNQARDPNRFGPDCVVSLMRLLEETDGGDAEVSSAAKTSDEDKISGSGGGGVGNDWVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00549 359 MobiDBLite consensus disorder prediction 282 301 - -
Aip04g00549 359 Pfam Zinc finger, C3HC4 type (RING finger) 310 353 - -
Aip04g00549 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 358 IPR013083 -
Aip04g00549 359 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 264 359 - -
Aip04g00549 359 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 178 247 - -
Aip04g00549 359 SMART ring_2 311 348 IPR001841 -
Aip04g00549 359 MobiDBLite consensus disorder prediction 233 248 - -
Aip04g00549 359 CDD RING-HC 311 348 - -
Aip04g00549 359 MobiDBLite consensus disorder prediction 8 25 - -
Aip04g00549 359 SUPERFAMILY RING/U-box 307 356 - -
Aip04g00549 359 MobiDBLite consensus disorder prediction 1 27 - -
Aip04g00549 359 ProSiteProfiles Zinc finger RING-type profile. 311 349 IPR001841 -
Aip04g00549 359 MobiDBLite consensus disorder prediction 229 248 - -
Aip04g00549 359 PANTHER OS01G0917900 PROTEIN 264 359 - -
Aip04g00549 359 PANTHER OS01G0917900 PROTEIN 178 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00549 Aip-Chr4 6613690 6618230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00549 180 359 C3H Transcription Factor Family AT4G22250 48.259 9.04e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00549 - - aip:107638663 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00549 04 6613690 6618230 Aip04g00549 04 6613690 6618230 ECH
Aip01g02538 01 125712950 125713702 Aip04g00549 04 6613690 6618230 PCT