Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00545 ATGTCCATAAACGAGGATGATGTGAAGAATGATTCTGATAATGATTTGGGTGATGATTTCGATTATCAACCGAATGCAGAAGACGATGCTGAAGACGACGATGTGGATTCGCTGGATTCTACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGTCCTGCCAGTTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGTAGGCAACTTGTTTGCAACAAAGAGGGCTGGAGGAATATGAGGTATCTCGATCTGAATGATAGATCAAGGGAGGCAATGTCACTAACGCGAACCAAGTGTCCAGCTTGGCTTAGGGTAAAGCTTGACTACGGCTGCGGTAGATGGAAAGTATCATGTTTTGTCGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGGTTCCGGCCAATCGTCGTCTCACTGTCACCGATAAAGTCCAAGTGGAAAATCTTCATAATTTTGGTGTCAAGACCTGCCATATTATGGGGTATATTGCGTTCCAGAAGGGTGGATATCGTCATGCTGGCTTCACACGCAAAGATTTGTACAACCACATTGATCGTTATCGTCGGTCAAAGGTTAAAAACGGGGATGCCAATGCGGCAATAAACTATTTGATTAGCAAGTCAAACAACGATCCGCTGTTCTTTGGAAAGTATACGTTCACTAGTGACGAAAGGCTCGAGCATATTTTTTGGGCAGATGGACAGTCAATTATCGACTATCACTGCTTTGGAGATATTGTTGCCTTTGATTCAACCTACAAGAAGAATAAATACAACAAGCCTTTGGTCATTTTCTCTGGATGCAATCATCACGGGCAGACTGTTATCTTCGGCTCCGGCCTACTATCCGACGAAACCACAGAGACGTATAAGTGGTTGTTGGAAACCTTTATTGAAGCGATGGGTGGGAAAAGTCCAAAAGCAGTAATAACTAACGGAGACCTTGCCATGCGAGATGCAATCAAGAATGTTCTGCCTGATGCGACCCATCGGTTATGCGGATGGCATCTGCAGAGAAATGCATGTGAAAATATAAAGAATCCTAATTTTCTGCGCGATTTTAAGGGTCTTATATACGACAACAACGACCAGAGAGACTTTGATCGGAGATGGGCAGCCATTTTGGATAAGCACAACCTTGTTGGCAGTACCTGGATGGAAAAGACGTACAAAACTCGTGAGATGTGGTCCCATTGTTTCCTCCGGGATAAGTTTTTCGGTTACATAAGGACGACATCACAGTGTGAAGGTATAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGAATTAATAGCTGACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATTACCTCGTTGGAGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTATTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCACTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAACCCTCGCGATCGATCATACGGCAATGCATCAGCCAAGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTTGTTCTCAATTAAGTCCGAACACCACTCAGGACCTAATACCAAGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACCGGAAGGGTAAAGACAACACTTTTGTTGAGCGGAGCCTCCATGAAAGCAGCGAATCCATTGACATCGCATCCACGAATGGTGTTTTCAATAAAAATCTCGACTCGTTAACACAGCAGGTGAAGGAGTCACAGCAGGACAAGAGACATTCATTTACGAACTATGAATGCGATAATGATGTCATTGATGATAAACGTGACACACGACATGTGCAGATCGATGTCTGA 2118 0.4367 MSINEDDVKNDSDNDLGDDFDYQPNAEDDAEDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWNLEFRTEDESCQFYNAYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDLNDRSREAMSLTRTKCPAWLRVKLDYGCGRWKVSCFVESHNHDLTPPQFAHLVPANRRLTVTDKVQVENLHNFGVKTCHIMGYIAFQKGGYRHAGFTRKDLYNHIDRYRRSKVKNGDANAAINYLISKSNNDPLFFGKYTFTSDERLEHIFWADGQSIIDYHCFGDIVAFDSTYKKNKYNKPLVIFSGCNHHGQTVIFGSGLLSDETTETYKWLLETFIEAMGGKSPKAVITNGDLAMRDAIKNVLPDATHRLCGWHLQRNACENIKNPNFLRDFKGLIYDNNDQRDFDRRWAAILDKHNLVGSTWMEKTYKTREMWSHCFLRDKFFGYIRTTSQCEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIADFKSQCSEPVMITSLESRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSYWRKKRACSNCHKYGHYYKHCPDLMQHSVEGNPRDRSYGNASAKDSGFSPERFANSSRLFSIKSEHHSGPNTKPFKKGGTRKFTATGMRNRKGKDNTFVERSLHESSESIDIASTNGVFNKNLDSLTQQVKESQQDKRHSFTNYECDNDVIDDKRDTRHVQIDV 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00545 705 SUPERFAMILY Retrovirus zinc finger-like domains 535 567 IPR036875 GO:0003676|GO:0008270
Aip04g00545 705 MobiDBLite consensus disorder prediction 1 42 - -
Aip04g00545 705 PANTHER OS02G0262500 PROTEIN 60 509 - -
Aip04g00545 705 MobiDBLite consensus disorder prediction 602 623 - -
Aip04g00545 705 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 509 IPR031052 GO:0006355
Aip04g00545 705 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Aip04g00545 705 ProSiteProfiles Zinc finger CCHC-type profile. 549 564 IPR001878 GO:0003676|GO:0008270
Aip04g00545 705 MobiDBLite consensus disorder prediction 11 39 - -
Aip04g00545 705 Pfam MULE transposase domain 286 380 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00545 Aip-Chr4 6551013 6553782 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip04g00545 MULE 6.5e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00545 - - ahf:112742151 1420.99