Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00542 ATGGCACTAATGCAGCGCCTAGCTAGAACAGCACGCCCCCTCCGAACCCTAATCTCTCGCCCCCTTTCCCCTCACAAATCAGCACTTGCTTCATTCGCCGTGCCTCGAGTTTTGGGATCCGGACCCTCACGTGATGATCACTATCAGGCACCGTATTCGTTGCTTCCGGCTGTGTTAGCTGGTGCTTTCGGAATTGGATTGGCGGAGACGGTGTATGCTGATGCCGATCGCGGTGGCGTTGGCGGCGCTGAGGATGTGCACGCTGTTGCGAAGAAAGAACGCGAGCGCATTGAGGAGTCGCTTAGGAAGAAAGGAGTTCGTTATGGTTCTTATCCTCGCTTCACTGTTGCTGTTAAAGGACAAAAGGTCAGCGTTAAGTTTCAAATACCTCCTGCCTGTGAAGTCCCGCAACTTATTGCAAATCTCGCAACAAATCTTGGACTGAAAGCTGAAGGGAACGGAGGTGGATCGGATATGCTATTGCGATCTTGGGACAGCACAGTGGCTTGGCAGCTTGCCCTTACTCATCCGTCCAAGAAAAAGCATATTCAAGGGGATGATCCATCTTCAATAGATATGAATGGACATGATGGAGATCTTTGCATACTCTTTTTTCATTCTCTCATTGGCTCAGATAAAGCTGAAATTGAACTTATTAAGCAAGGGAACTTGAGTCCTGAAGAGCTTGATGCTTTCGTCTCTGTTTTGCAATTAGCTGGTAGCAAGATGGGACAAAGAAGTTCCCCCCTGGAAAGGAAGTCAAGGGAAGAGACTGAACAGTCGCCATCTGTAGATAAATCTATTTCTAGTCTTGAGGCCATGGGAGTGAGAATTTATGGATTGAATGAACCCATTGGTATATCAAATGGTGAGGTATCATGGGATAACATTGCTGGATATGAACATCAAAAACGAGTAATAGAAGATACAATACTGTTGGCTTTGCATAGTCCTGAAGTATATGACAATATTGCACGAGGGACTCGTCATAAGTTTGAATCAAACCGGCCTCGAGCTGTGCTGTTTGAAGGTCCACCAGGTACAGGGAAAACTTCTTGTGCTCGCGTTATTGCCAATCAAGCAGGTGTCCCCTTGCTATATGTTCCACTTGAGGCTATAATGTCTGAATACTACGGTAAAAGTGAACGCCTTCTGGGAAAAGTGTTTTCACTTGCAAATGAACTTCCTAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCTCGGGATAATGAAATGCATGAAGCTACAAGGAGAATATTGTCAGTGTTGTTACGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTTGTGATTGCTGCTACCAATAGAAAGGAAGACCTTGATCCTGCATTAATCAGCCGGTTTGATACTATGATCCCTTTTGGCTTACCTGATCACCGTAATCGTCAGCAAATAGCATCCAAATATGCAAAGCACCTAACCAAACCTGAACTAGATGAACTTGCCAGAGCTACAGAAGATATGTCCGGAAGAGACATTCGTGATGTTTGTCAGCAAGCAGAACGATCGTGGGCATCAAAGATTATTCGAGGGCAAGTATCCAAAGATGGTGAACAAGAAAGTCTTCCACCTTTGCAAGAATATATAGAGTGCGCCACAATTCGGCAAAACTCACTGCTCAGTGCTGCTGCTGGCAGGAATTTCCGAACTTCTTCCCATCTTAGGATGGCAACCGACTGA 1719 0.4538 MALMQRLARTARPLRTLISRPLSPHKSALASFAVPRVLGSGPSRDDHYQAPYSLLPAVLAGAFGIGLAETVYADADRGGVGGAEDVHAVAKKERERIEESLRKKGVRYGSYPRFTVAVKGQKVSVKFQIPPACEVPQLIANLATNLGLKAEGNGGGSDMLLRSWDSTVAWQLALTHPSKKKHIQGDDPSSIDMNGHDGDLCILFFHSLIGSDKAEIELIKQGNLSPEELDAFVSVLQLAGSKMGQRSSPLERKSREETEQSPSVDKSISSLEAMGVRIYGLNEPIGISNGEVSWDNIAGYEHQKRVIEDTILLALHSPEVYDNIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAIMSEYYGKSERLLGKVFSLANELPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMIPFGLPDHRNRQQIASKYAKHLTKPELDELARATEDMSGRDIRDVCQQAERSWASKIIRGQVSKDGEQESLPPLQEYIECATIRQNSLLSAAAGRNFRTSSHLRMATD 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00542 572 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 27 555 - -
Aip04g00542 572 CDD AAA 333 469 - -
Aip04g00542 572 Gene3D - 470 532 - -
Aip04g00542 572 MobiDBLite consensus disorder prediction 248 262 - -
Aip04g00542 572 ProSitePatterns AAA-protein family signature. 441 460 IPR003960 GO:0005524|GO:0016887
Aip04g00542 572 MobiDBLite consensus disorder prediction 243 267 - -
Aip04g00542 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 519 IPR027417 -
Aip04g00542 572 SMART AAA_5 336 471 IPR003593 -
Aip04g00542 572 Pfam ATPase family associated with various cellular activities (AAA) 340 468 IPR003959 GO:0005524|GO:0016887
Aip04g00542 572 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 27 555 - -
Aip04g00542 572 Gene3D - 291 469 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00542 Aip-Chr4 6485103 6491701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00542 336 536 Calmodulin-binding Proteins AT3G56690 36.842 9.20e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00542 - - gmx:100803362 846.269