Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00540 ATGGAAGCTGAGGGTGGTAGCTCTAATGGTGGCCCTTCTAATTGTTTCATGGCTTTTGGAGAAAACAACAACAGTAGTAGTAATAATAACAATAACAGTGTTAGTGGTAGTGGCCTATCTCCAATGATGATGATGCCTTTAGTCACTAATTCCCATCATCCAACAAATAATAATCTTATTCCTCATCAAAATCATACTTCTACTTCTAATAACATTGCAAACCTCTTCCTTCCCATGCCTACTTCCAACACCAACAATAATAATACCAACACTTCTTTCATGCTTGAAAACAATACTACTACTACTACTACTACTACTACTGGATTAGGGTATTATTTCATGGACAACAATGGAAGCTCTTCTTCCTCTTCTCCTTCTTCTGCTGTCAAGGCAAAGATCATGGCCCATCCTCACTATCACCGCCTCTTGGCAGCTTACATCAATTGTCAAAAGGTTGGAGCACCACCTGAAGTGGTGGCAAGGTTAGAAGCAGCATGTGCATCTGCCATGTCAATGGCAGCTGCAGGAGACACATCAGCTTCTTGCCTAGGTGAAGATCCATCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTCACAAAGTACGAGCAAGAACTTTCAAAACCCTTGAAGGAAGCCATGATCTTCCTTCAAAGGATGGAGTCTCAGTTCAAGAATCTCACCATCTCTTCTTCTTCTAGAGATCTTGGTAGCAAGGAGGCAAATGATGGGAATAATGGATCATCAGAAGAAGATGTAGATCTACAAAGCTTGATAGATCCTCAGGCAGAAGACAGGGAATTGAAGGGTCAGCTTCTTAGAAAGTACAGCGGCTACTTGGGAAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCGAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCTCTAGCAGAATCCACTGGTTTGGATCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGGAAACGCCACTGGAAGCCTTCTGAGGACATGCAATTTGTGGTGGTGGATCCAACCCATCCACATTATTACATGGATAATGTTCTTGCCAATCCATTTTCCATGGATCTCCCCAACACAATGCTCTAG 1161 0.4238 MEAEGGSSNGGPSNCFMAFGENNNSSSNNNNNSVSGSGLSPMMMMPLVTNSHHPTNNNLIPHQNHTSTSNNIANLFLPMPTSNTNNNNTNTSFMLENNTTTTTTTTTGLGYYFMDNNGSSSSSSPSSAVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVARLEAACASAMSMAAAGDTSASCLGEDPSLDQFMEAYCEMLTKYEQELSKPLKEAMIFLQRMESQFKNLTISSSSRDLGSKEANDGNNGSSEEDVDLQSLIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPTHPHYYMDNVLANPFSMDLPNTML 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00540 386 SUPERFAMILY Homeodomain-like 290 365 IPR009057 -
Aip04g00540 386 MobiDBLite consensus disorder prediction 232 255 - -
Aip04g00540 386 Pfam ELK domain 268 289 IPR005539 GO:0003677
Aip04g00540 386 ProSiteProfiles 'Homeobox' domain profile. 288 351 IPR001356 GO:0003677
Aip04g00540 386 SMART KNOX1_2 127 171 IPR005540 GO:0003677|GO:0005634
Aip04g00540 386 SMART HOX_1 290 355 IPR001356 GO:0003677
Aip04g00540 386 MobiDBLite consensus disorder prediction 1 43 - -
Aip04g00540 386 ProSitePatterns 'Homeobox' domain signature. 326 349 IPR017970 GO:0000981|GO:0006355
Aip04g00540 386 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 375 - -
Aip04g00540 386 SMART KNOX2_2 179 230 IPR005541 GO:0003677|GO:0005634
Aip04g00540 386 CDD homeodomain 300 352 IPR001356 GO:0003677
Aip04g00540 386 Gene3D - 293 355 - -
Aip04g00540 386 Pfam KNOX1 domain 128 167 IPR005540 GO:0003677|GO:0005634
Aip04g00540 386 ProSiteProfiles ELK domain profile. 268 288 IPR005539 GO:0003677
Aip04g00540 386 Pfam Homeobox KN domain 308 347 IPR008422 GO:0003677|GO:0006355
Aip04g00540 386 Pfam KNOX2 domain 183 229 IPR005541 GO:0003677|GO:0005634
Aip04g00540 386 PANTHER - 4 375 - -
Aip04g00540 386 MobiDBLite consensus disorder prediction 7 39 - -
Aip04g00540 386 SMART ELK_2 268 289 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00540 Aip-Chr4 6463600 6468303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00540 129 386 Homeobox Transcription Factor Family AT1G62360 79.848 5.15e-134 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aip04g00540 KNOX2 3.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00540 - - gmx:547796 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02546 01 125867150 125871218 Aip04g00540 04 6463600 6468303 PCT