Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00520 ATGATATTTGATTATGATGATGATCAGCTAGCGATGTTGCAAGTGGAGCTTGAAATGCAACAACAGCAACAAGAACAAGTAGATGATGAGGTTGTTGAGGGAAAAGTAGTAGTGGGAGGGGAAGCCAGACAGTTGCTTGATGTAGGAAACGATAATCAAGCATCAGATTCTTCTTCTGATGAAAGAACACGATCCAGCACACCTCACGCCCAAGTTGGAATCAGGAATAATAGCAATGGAAAGAACGAGAGGGAAGACAGTCCAGATTCACAATCACAAGCTTGGGGTCCCGCTCCCAACAAGCTCCAAAAACCCAACCCCACCATGGACCAATCCTCTTCTGAAGCCACCATGAGAAAAGCCCGTGTCTCAGTCCGTGCTCGCTCAGAAGCTCCCATGATCAGTGATGGATGCCAGTGGAGAAAATATGGACAAAAAATGGCAAAGGGAAATCCATGTCCTCGAGCTTATTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGACAGAACTATTTTGGTAACTACATATGAAGGAACACACAGCCATCCGCTACCACCGGCAGCCATGGCTATGGCATCAACCACCACAGCAGCTGCCACCATGTTACTGTCAGGTTCCATGTCAAGTGCAGATGGAATCATGAACCCAAACCTCCTAGCAAGAGCTATTTTTCCATCGTGCTCTACTTCTTCTACTTCTTCAAGCATGGCAACACTCTCAGCTTCGGCACCATTCCCAACTGTCACATTGGACCTCACACAAAACCCATCATCATCAAATAATACTAATAATACTTCCACTCCTCCAATCAGGCATCATCATCCTCTTAATGCTGTCCCTTTGTTCCAGCTACCCAATTTCCAAGGCCACCCCCAGAACTTTGGGAATCAAGCCTTATATAATCAATCAAAATTCTCCGGTCTTCAATTGTCTCAACAAGTTGCTGCCTCTTCTCAATTGGGAATCCAAGCTTCAAGGCCACCTTTGCACCACAACCAACCACAACAACAGCCGCCATCCCTGGCTGATTCCGTCACCGCAGCCATCACCACCGATCCTAACTTCACTGCCGCTATCGCAGCCGCCATCTCCTCCATCATCGGAGGTAACAATAATAATAATCAACCAAACAGCACTGGAGACGGTAACAACAACAACAACAGCGGCAGCAATCCTAGTATGAGCAACAGGACAACAATTAGCAGCTTTTCGGGGAATTAA 1251 0.4668 MIFDYDDDQLAMLQVELEMQQQQQEQVDDEVVEGKVVVGGEARQLLDVGNDNQASDSSSDERTRSSTPHAQVGIRNNSNGKNEREDSPDSQSQAWGPAPNKLQKPNPTMDQSSSEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHSHPLPPAAMAMASTTTAAATMLLSGSMSSADGIMNPNLLARAIFPSCSTSSTSSSMATLSASAPFPTVTLDLTQNPSSSNNTNNTSTPPIRHHHPLNAVPLFQLPNFQGHPQNFGNQALYNQSKFSGLQLSQQVAASSQLGIQASRPPLHHNQPQQQPPSLADSVTAAITTDPNFTAAIAAAISSIIGGNNNNNQPNSTGDGNNNNNSGSNPSMSNRTTISSFSGN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00520 416 MobiDBLite consensus disorder prediction 334 353 - -
Aip04g00520 416 MobiDBLite consensus disorder prediction 381 416 - -
Aip04g00520 416 ProSiteProfiles WRKY domain profile. 129 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g00520 416 MobiDBLite consensus disorder prediction 40 128 - -
Aip04g00520 416 MobiDBLite consensus disorder prediction 258 284 - -
Aip04g00520 416 Pfam WRKY DNA -binding domain 136 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g00520 416 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 10 397 IPR044810 GO:0003700
Aip04g00520 416 MobiDBLite consensus disorder prediction 89 119 - -
Aip04g00520 416 SUPERFAMILY WRKY DNA-binding domain 127 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g00520 416 MobiDBLite consensus disorder prediction 258 281 - -
Aip04g00520 416 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 10 397 - -
Aip04g00520 416 SMART WRKY_cls 134 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g00520 416 Coils Coil 10 30 - -
Aip04g00520 416 Gene3D WRKY domain 119 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g00520 416 MobiDBLite consensus disorder prediction 48 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00520 Aip-Chr4 6174956 6177370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00520 43 396 WRKY Transcription Factor Family AT1G62300 55.438 1.00e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip04g00520 WRKY 9.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00520 - - ccaj:109803638 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00520 04 6174956 6177370 Aip04g00520 04 6174956 6177370 ECH
Aip07g00268 07 2269249 2275792 Aip04g00520 04 6174956 6177370 ECH
Aip03g01503 03 16521584 16524574 Aip04g00520 04 6174956 6177370 ECH