Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00516 ATGGACTACTACTGGACTAGAGGTCACACCCTCGGCCGGGGCTCCACAGCCACCGTCTACACTGCTGAATTTCATGGGTCTGGTGAACTCTTTGCCGTGAAGTCAGCGGAGGTACACCGATCTGAGGAGCTGCGGAAGGAACAGGGTCTTCTTTCATCGCTCAATTGTCCTCAGATTGTCAAGTACAAAGGGTACGATGTTACGTACGAGGATGGTCTGTACTTTTACAACCTCTTCTTGGAATACGCGCCAAGGGGGACCCTGCTTGACGTAATTGCCCATTACAACCACCGCGGTGCCACCATGGAACACTCGTTGGCCAGTGTCTACACGCGCCAGATTCTGTTGGGACTCAACTATCTTCATTCCAATGGGATAGTACATTGCGACGTCAAGGGGCAGAACGTTCTCATCACCCAACATGGTGCCAAAATCGCCGACTTTGGTTGTGCCTGCAAAGTTGGCTCCGGCGCCGGCGGACGAGGAGGGGTTATCGCTGGAACGCCGGCGTTCATGGCGCCGGAGGTGGCGCGTGGGGATGAACAGGGATTCACAGCTGACGTGTGGGCCCTGGGATGCACCGTTCTTGAGATGGTTACCGGGAAACCGCCGTGGAAAGACGTTTCCGGCGACCCTGTTTCGGTGCTTTATCGGGTTGGATTCTCCGGCGAGGCGCCAGAGATTCCGGAATCTGTGTCGGAGGAAGTTAAGGACTTCTTGGGGAAGTGCTTGAGGAGTGAAGCGAGTAAGAGGTGGACGGTGAAGGAGCTTCTGGGACACGCGTTCGTTGCGGAGTCGCGTTTTGTGGGAATAGAATGTGATGATCATGATTTGGACACACCCACAAGTGTTTTGGAACCACAAGGCCTTTGGAACTGGGACACCAATCAGGACTCGCCACGTGGCATCTCTTCAATGAATTCTCCAAGTGCTAGGGACAGAGTTCTTGGGTTGTGTGGTGATGATGAGCCTAACTGGGATCTTAATAATGCTGATGATGATAAGTGGATCACTGTCAGAAGCAATGGGGACTACTCTCCCGTTGGAGTAGCTCAGGATTTTTGTTCAGACAATGTTAGGATCCTTAGAGAGGATGATGAGAATGTTTTGGTGAATTTTTATGAACCACCAAAGGATGTAGTAGTAATTTGCAATGTAATTCATGAATTGAGTAGATGGAATGATGTAGTAGTTGTTGTTGGTGATTCTTACCTTTGCAGAATCATTGATTGTAAGTGTTGCATTAGAGATTCAGTGTTTGTAGGGTGTTGTTCATCATGTTCATCTCTAAACATTTATTATTATTGTAAGAAGAAAGAAATTTATGTTACGCATGGTCTCCTCTTTAATTCCACTTTGGATGATATTGCTACTTACAATTTAAATTTACTATTCTACTTCAATGGAATAATATTCCCAATAATGTGA 1428 0.4783 MDYYWTRGHTLGRGSTATVYTAEFHGSGELFAVKSAEVHRSEELRKEQGLLSSLNCPQIVKYKGYDVTYEDGLYFYNLFLEYAPRGTLLDVIAHYNHRGATMEHSLASVYTRQILLGLNYLHSNGIVHCDVKGQNVLITQHGAKIADFGCACKVGSGAGGRGGVIAGTPAFMAPEVARGDEQGFTADVWALGCTVLEMVTGKPPWKDVSGDPVSVLYRVGFSGEAPEIPESVSEEVKDFLGKCLRSEASKRWTVKELLGHAFVAESRFVGIECDDHDLDTPTSVLEPQGLWNWDTNQDSPRGISSMNSPSARDRVLGLCGDDEPNWDLNNADDDKWITVRSNGDYSPVGVAQDFCSDNVRILREDDENVLVNFYEPPKDVVVICNVIHELSRWNDVVVVVGDSYLCRIIDCKCCIRDSVFVGCCSSCSSLNIYYYCKKKEIYVTHGLLFNSTLDDIATYNLNLLFYFNGIIFPIM 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00516 475 ProSiteProfiles Protein kinase domain profile. 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00516 475 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 358 - -
Aip04g00516 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Aip04g00516 475 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00516 475 Gene3D Transferase(Phosphotransferase) domain 1 2 287 - -
Aip04g00516 475 SUPERFAMILY Protein kinase-like (PK-like) 5 300 IPR011009 -
Aip04g00516 475 CDD STKc_MAPKKK 5 263 - -
Aip04g00516 475 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Aip04g00516 475 PANTHER MAP KINASE KINASE KINASE 5 358 - -
Aip04g00516 475 SMART serkin_6 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00516 Aip-Chr4 6137041 6138544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00516 5 263 MAP Kinase Kinase Kinase AT2G32510 56.274 1.27e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aip04g00516 Pkinase 3.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00516 K20716 - gmx:100802174 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00516 04 6137041 6138544 Aip04g00516 04 6137041 6138544 ECH