Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00493 ATGAGTGACTCCAATCATCATAGTACCACTGAAGCAAACACTGCTAGCTCTGACCAATTTGTGAAAGAGATGAGACAAGAGGAGGAGCCTACTATGTTGGAATTCTCCGAAGATGAGGAAGATCTTGTTGCCAGGATGTTTAGATTGGTTGGGAAGAGGTGGTCTCTTATCGCTGGGAGAATCCCTGGAAGAACAGCACAAGAGATTGAAAAGTATTGGAGTTCAAAGTGCGCATTTCCCAGTGACCAATGCTCTTCCTCTGCATAA 267 0.4457 MSDSNHHSTTEANTASSDQFVKEMRQEEEPTMLEFSEDEEDLVARMFRLVGKRWSLIAGRIPGRTAQEIEKYWSSKCAFPSDQCSSSA 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00493 88 CDD SANT 34 73 IPR001005 -
Aip04g00493 88 Gene3D - 34 77 - -
Aip04g00493 88 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 78 - -
Aip04g00493 88 PANTHER AND CPC, PUTATIVE-RELATED 1 78 - -
Aip04g00493 88 MobiDBLite consensus disorder prediction 1 20 - -
Aip04g00493 88 MobiDBLite consensus disorder prediction 1 36 - -
Aip04g00493 88 ProSiteProfiles Myb-like domain profile. 35 77 IPR001005 -
Aip04g00493 88 SUPERFAMILY Homeodomain-like 35 75 IPR009057 -
Aip04g00493 88 SMART sant 31 79 IPR001005 -
Aip04g00493 88 Pfam Myb-like DNA-binding domain 34 73 IPR001005 -
Aip04g00493 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 81 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00493 Aip-Chr4 5824237 5825569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00493 35 75 MYB Transcription Factor Family AT3G13540 63.415 7.39e-15 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip04g00493 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00493 - - adu:107482590 181.03