Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00486 ATGTCCAAGTTTTTCTCTAAACGCCGCCTTCACCTCTGCTTCACGAAACAACACCACCAATCAAGCATGGAGGAAGACGACGACTTGTTCTACTCGTCTTCAGCAGACTCTGACACATGTGATGATGAATTACCACCTCACTTACCATCCGTGATCTCCTCAAAGCGCTTCTTCTTCTCTTCACCAAGCCGCTCCAGCTCCATCATTGATCAGCACATAATTGAGGGAGGAGTGGGAGTCACCAAGCACTCCCTCGACCCCTACATGGATTTCCGGCGTTCCATGCAGGAAATGGTTCATTCCAGGGACACAAAAGACTGCGAGTATCTGCAGCAGCTTCTATTGTGCTACCTTTCTCTCAACCACCCACACACTCATAACTACATCCTCGCTGCCTTCGCTGACCTCCTCCTTCACCTCTTCTCCTCTGACCACCACCACCACCACGCCAGCAACCACTCCTCTTCAGGGCTTCTAATTTCCTCTCAACATAATAATAATAATATTTAA 510 0.4863 MSKFFSKRRLHLCFTKQHHQSSMEEDDDLFYSSSADSDTCDDELPPHLPSVISSKRFFFSSPSRSSSIIDQHIIEGGVGVTKHSLDPYMDFRRSMQEMVHSRDTKDCEYLQQLLLCYLSLNHPHTHNYILAAFADLLLHLFSSDHHHHHASNHSSSGLLISSQHNNNNI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00486 169 Pfam Transcriptional repressor, ovate 84 141 IPR006458 -
Aip04g00486 169 PANTHER OS03G0159400 PROTEIN 25 148 - -
Aip04g00486 169 ProSiteProfiles OVATE domain profile. 80 139 IPR006458 -
Aip04g00486 169 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 25 148 IPR038933 GO:0045892
Aip04g00486 169 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 80 142 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00486 Aip-Chr4 5650618 5651127 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Aip04g00486 Ovate 4.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00486 - - ahf:112794162 243.047