Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00483 ATGATGCAGCCAGGACCCGGAATGCCTCCAACAAACATGGGCCAGCAGCCACCACAGCAGTACCAACAGCAGCCGCCGCAGCAGCAACCGCCATACATGATGATGCCGCCTCAGCCTCAGGCGCCCCCACCCATGTGGGCTCCTTCCGCCCAGGCGCCGCCTCAGCAGGTTGCTCAGCCGCAGCAATCGGCTCAGCCCACCAGCGCCGACGAGGTCCGCACCCTCTGGATCGGAGACTTGCAGTACTGGATGGACGAGAACTACCTCTACAACTGCTTCGCTCACACCGGCGAGGTGACCTCAGTAAAGGTTATCCGGAACAAGCAAACTGGTCAGTCTGAGGGTTATGGTTTTATCGAGTTTGGTAGCCGGGCCGGAGCTGAGAGGGTGCTCCAGTCATATAATGGAGCGATTATGCCAAATGGTGGACAGAGCTTCAGATTGAACTGGGCTACTTTTAGTGCTGGTGAGAAGCGTCATGATGATAGTCCAGATCACACCATATTCGTTGGTGATTTGGCTGCAGATGTTACTGATTACCTCCTTCAGGAGACATTTAGGACTCGTTATAGCTCGGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTCACTGGCCGGACTAAGGGTTATGGTTTTGTAAGATTTGCGGATGAAAGTGAACAAATGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCGACTAGACCCATGAGGATTGGACCGGCCTCTAATAAAAACCCTGCCACTCAGCAGAAAGCATCTTATCAGAATCCTCAAGGTGCACAGAATGAGAATGATCCAACTAATACAACAATTTTTGTGGGCAATTTGGACCCCAACGTCACTGATGATCTTCTGAGACAAGTTTTTGGTCAGTACGGAGAGTTAGTTCATGTGAAGATTCCAACGGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTGTGCAGAAGAGGCACTAAGGGTTTTGAATGGATCCCAGTTGGGTGGACAAAATGTACGGCTCTCATGGGGCCGCAGTCCTTCAAACAAACAGTCTCAGCCGGAAACAAACCAGTGGAGTGGCGGGAGTGGTACCGGCGGGAGTGGCGGATATTATGGATACGCTCAAGGCTATGAAAATTATGGTTATGCTCCCACTGGACAGGACCCCAACATGTATGGCAGTTATCCGGGGTATCCTAACTACCAACCTCCGCAGCAACAGCAGCAATTAGGATATAGTTGA 1236 0.5146 MMQPGPGMPPTNMGQQPPQQYQQQPPQQQPPYMMMPPQPQAPPPMWAPSAQAPPQQVAQPQQSAQPTSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVTSVKVIRNKQTGQSEGYGFIEFGSRAGAERVLQSYNGAIMPNGGQSFRLNWATFSAGEKRHDDSPDHTIFVGDLAADVTDYLLQETFRTRYSSVKGAKVVIDRLTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNPATQQKASYQNPQGAQNENDPTNTTIFVGNLDPNVTDDLLRQVFGQYGELVHVKIPTGKRCGFVQFADRSCAEEALRVLNGSQLGGQNVRLSWGRSPSNKQSQPETNQWSGGSGTGGSGGYYGYAQGYENYGYAPTGQDPNMYGSYPGYPNYQPPQQQQQLGYS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00483 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 140 IPR000504 GO:0003723
Aip04g00483 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 231 IPR000504 GO:0003723
Aip04g00483 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 336 IPR000504 GO:0003723
Aip04g00483 411 SUPERFAMILY RNA-binding domain, RBD 72 247 IPR035979 GO:0003676
Aip04g00483 411 CDD RRM1_SECp43_like 74 154 - -
Aip04g00483 411 MobiDBLite consensus disorder prediction 336 363 - -
Aip04g00483 411 MobiDBLite consensus disorder prediction 1 70 - -
Aip04g00483 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 408 - -
Aip04g00483 411 MobiDBLite consensus disorder prediction 238 271 - -
Aip04g00483 411 SMART rrm1_1 74 149 IPR000504 GO:0003723
Aip04g00483 411 SMART rrm1_1 167 241 IPR000504 GO:0003723
Aip04g00483 411 SMART rrm1_1 272 339 IPR000504 GO:0003723
Aip04g00483 411 CDD RRM2_SECp43_like 165 244 - -
Aip04g00483 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 343 IPR000504 GO:0003723
Aip04g00483 411 Gene3D - 246 381 IPR012677 -
Aip04g00483 411 SUPERFAMILY RNA-binding domain, RBD 255 370 IPR035979 GO:0003676
Aip04g00483 411 MobiDBLite consensus disorder prediction 397 411 - -
Aip04g00483 411 CDD RRM3_NGR1_NAM8_like 270 341 - -
Aip04g00483 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 245 IPR000504 GO:0003723
Aip04g00483 411 Gene3D - 165 241 IPR012677 -
Aip04g00483 411 MobiDBLite consensus disorder prediction 240 271 - -
Aip04g00483 411 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 22 408 - -
Aip04g00483 411 MobiDBLite consensus disorder prediction 52 70 - -
Aip04g00483 411 Gene3D - 72 152 IPR012677 -
Aip04g00483 411 MobiDBLite consensus disorder prediction 23 50 - -
Aip04g00483 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 153 IPR000504 GO:0003723
Aip04g00483 411 MobiDBLite consensus disorder prediction 336 362 - -
Aip04g00483 411 MobiDBLite consensus disorder prediction 383 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00483 Aip-Chr4 5632844 5636674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00483 74 353 Eukaryotic Initiation Factors Gene Family AT4G34110 28.772 3.25e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00483 - - aprc:113864230 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03000 01 132518584 132521067 Aip04g00483 04 5632844 5636674 PCT