Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00477 ATGAGTTGCCTCAATTGCTGCAAGACTGCTGAGGTCGAATCGCCATCTTACCGGGAAGCGTTGGCAGAGAGTGCAAAACGGAGAATGTCCAGAGGCTATATAACATTCAAATCATTAGCCGCCGCTGTGTCACTCAAAACAGGTAGCAGCAAGCATAGACAAATCAATGAACAGATTAAAAAATACGGAGAAGTGAAGAATGATATCAAGGTGTTCACATACAATCAAATTGCTGAAGCAACAGAAAATTTCAATTCTGATAACCTTCTTGGAGAAGGAGGATTTGGTTCTGTCTACAAAGGTTACATATGTGATCAGCATGTAGCAATGAAGCAACTGAACAGGCAAGGAGCACAAGGAACAAGAGAATTTTATGCAGAGGTTTTGATGCTAAGTTTGGTGAAGCATCCAAACCTTGTACAGCTAGTTGGTTATTGTACAGAAGATGAACATAGGGTTTTGGTCTATGAGTACATGGCCAAAGGAAGCTTGGAAAATCACCTCCTAGACCTAGGCGAGGGTAAGAAGCCTTTGGATTGGCACACAAGGATGAAAATTGCTGAGGGAGCAGCCAGAGGGCTTGAGTATTTGCATAGCTCTGCAGATCCTCCGGTTATATATCGTGATTTCAAGTCATCTAATATACTATTAGACGAAGATTTCAATGCAAAACTTTCCGATTTTGGACTAGCTAAGATTGCTCCAAATGGTCAGGGAACTATCACATCCAGGGTGATGGGAACCTTTGGCTACTGTGCACCAGAATATGCTTCTGGTGGTCAATTAACCACAAAATCAGATGTTTACAGTTTTGGTGTGGTGTTCTTGGAAATAATCACTGGCAGGAGAGTAATTGACACTACAAGAGATATTGAGGAGCAAAACTTGATTGAATGGGCACAACCTCTTCTCAAGGATAAGAAGCAGTTCAGTCTAATTGCTGATCCTTTGCTTAATGGCCAGTTCCCTGCAAAGGGTCTATTTCAAGCACTTGCAGTGGCAGCAATGTGTCTCCAAGAGGATCCTGAGAAACGACCTGACATGGACGATGTTGTAACGGCTCTAGCAATTCTATCGGCGACCAAGACCGACGAAAAAGATGGTGCTGGCGAAGCAGTAAAAACTGGCGGGCATGTCGAATCTTTCAGAGCAGCAGAATCATTCAACAAGGAAGAGCAAAGGGGATAG 1188 0.4318 MSCLNCCKTAEVESPSYREALAESAKRRMSRGYITFKSLAAAVSLKTGSSKHRQINEQIKKYGEVKNDIKVFTYNQIAEATENFNSDNLLGEGGFGSVYKGYICDQHVAMKQLNRQGAQGTREFYAEVLMLSLVKHPNLVQLVGYCTEDEHRVLVYEYMAKGSLENHLLDLGEGKKPLDWHTRMKIAEGAARGLEYLHSSADPPVIYRDFKSSNILLDEDFNAKLSDFGLAKIAPNGQGTITSRVMGTFGYCAPEYASGGQLTTKSDVYSFGVVFLEIITGRRVIDTTRDIEEQNLIEWAQPLLKDKKQFSLIADPLLNGQFPAKGLFQALAVAAMCLQEDPEKRPDMDDVVTALAILSATKTDEKDGAGEAVKTGGHVESFRAAESFNKEEQRG 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00477 395 Pfam Protein kinase domain 85 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00477 395 Gene3D Transferase(Phosphotransferase) domain 1 159 368 - -
Aip04g00477 395 Gene3D Phosphorylase Kinase; domain 1 44 158 - -
Aip04g00477 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Aip04g00477 395 ProSiteProfiles Protein kinase domain profile. 84 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00477 395 ProSitePatterns Protein kinases ATP-binding region signature. 90 111 IPR017441 GO:0005524
Aip04g00477 395 PANTHER OS07G0668900 PROTEIN 1 390 - -
Aip04g00477 395 SUPERFAMILY Protein kinase-like (PK-like) 67 356 IPR011009 -
Aip04g00477 395 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 390 - -
Aip04g00477 395 CDD STKc_IRAK 90 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00477 Aip-Chr4 5604402 5608417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00477 46 358 Glycoside Hydrolase AT3G07070 60.436 6.78e-134 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Aip04g00477 Pkinase 9.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00477 - - var:108343506 539.65