Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00470 ATGGCAGCCTCCGGCAGCGGCCGGATTTCATTCTCTTCCTTTGCTTCTCTGTCACGTGGAGCCACCGCCGGAGCCAGTGGTAGGAGGAACCTAGACTTCTTGAAGTTTTCCAACGGAGAATTCATGGCTGGGAAGAAGCTGAAACGACTTGAGCTTCATCAACCACGACGTCGTTGTAATAATGATGATAATAACAATAAAATTTCCAGGGTCAACGGTAAAATCGTGTCTGTTATCAGTGAGGTGGAGGCTCAGTTGAAGGAACTAGATTACGAGAGCAAGGACCCGAAGACAGTTTTGGCAATTATACTTGGTGGAGGAGCTGGAACTCGTCTCTTCCCTCTCACAAAGCGCCGCGCCAAACCTGCTGTTCCGATTGGAGGTGCATACAGGCTGATTGATGTGCCAATGAGCAACTGCATAAACAGTGGGATCAACAAGATATACATTCTGACTCAATTTAACTCATGCTCGCTAAACAGGCACATTTCACGTTCTTATAGCCCTGGTGGAGTACTCACCTTTGGAGATGGCTATGTCGAGGTTCTTGCAGCCACTCAAGTTCCAGGCCAGGAGGGTCAAAGTTGGTTTCAGGGTACTGCTGATGCTGTAAGGCAGTTCCATTGGCTATTTGAGGATCCAAGAGCAAGGAACATTGAGGATGTATTGATTCTTTCCGGGGATCACCTGTATAGAATGAACTACATGGATTTGATTCAAGTTCACCGGGAGAGCAAAGCTGATATCACACTTTCTTGTCTTCCAGTTGATGAAAGCCGTGCCTCAGATTTTGGTCTAATGAAGACAGACAAAAAAGGAAGGGTGATTTCATTCAGTGAGAAGCCTAAAGGAGAAGACCTGAAAGCAATGCAAGTAGATACAACACTCTTGGGACTTTCACGGGAAGAGGCTGAAAAGAAACCATACATTGCTTCCATGGGAGTGTATGTGTTCAAGAAGGACTTACTTCTTAATCTATTAAGATGGCGCTTTCCAACTGCAAATGACTTTGGATCAGAAGTAATTCATGCTTGTGCTAGTGAGTGTTGCATTAAGGCTTTTCTCTTCAATGACTATTGGGAGGATATAGGGACAATCAAGTCATTCTTTGAGGCAAATTTAGCCCTCACCGAAAATCCATCCAGGTTTAGCTTTTACGAAGCAGGAAAACCAATGTATACATCAAGGAGAAACTTACCACCATCAAATATTGACAATAGCAAGATTGTTGACTCAATAGTATCACATGGATGCTTCTTGACCAATTCCTTTATAGAGCATAGCGTAGTTGGAATCAGATCCAGAATAAACTCAAATGTTCACTTAAAGGATACAGTAATGCTAGGTGCTGATTATTTCGAAACTGAGGCTGAGGTGGCAAAATTGTTAGCTGAGGGAAAAGTTCCCGTAGGAATAGGAGAAAATACAAAGATTAAGGACTGCATTATTGACAAAAATGCTAGAATTGGAAAGAACGTTATAATTGCAAACTCAGAGGGGGTACAAGAGGCTGATAGATCTTCAGAAGGTTTCTACATCCGTTCTGGAATAACCATAGTATCGAAAAACTCACGATGGATACGAGAAGCAATAAAAGGAGAAGACAACTACAGAAAACAAATCGTAGTAGTACAAAATAGAAGGCAATCGTATTCGTATCGTAGTCGTAGTTTTAGGGTTCTTCACCAGAGTCTTCTCCATCACATTGTGGAGCTAACCATGGAAAACTTCACCTTGTCTTGGTCTTCTTCTTCATCTTCAACTTCTCCTCCTTCATCATCGCACATTGCAGGTGCAGCTTTCGACGACTATTCCGAGGACTTCTGCAGCATTTGTTTGGAGCCATTTGGCATCAATGACCCATCTACTATCACCTCTTGCAAACACGAATATCATCTGCACTGTATTCTTGAATGGTCAGAGAGAAGCAGAGAATGTCCAATATGTTTGCAGCTGCTTTCTTTCATTGATCCTTCTAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAATGTTCAAGGTCAAGAAACATATATCCATCTTCATTAACTAGTTCCCATATTCCCCATGAGCAGCTCAATTATGACTATGGCGATTCTTACTCAGATGAGTCTGATATTGATGATCAAATTATGCAACACCTAGTTGCTGCTTCAAGCAGATCTCGTTTTCTCCATAGACGGGAAAGGCAAAGATCTTCTAGTGCAGGTCCATCAGAGGTGTTTGTTTCCAATCCTCCTGTGCATGTGCCTGCTGTGCGACCAATACTCACCATTTCACCCACCGGCAGTAGTTCACCAACTTCTGGTGTACCGTCTACTGTTCACATTCAACCTCCAACATCTGCTTTTCCCCCAGTTGTTGGTGAAGTTGCAGGAATTACTACTGCTGAGAATGATGTTCCTTTCAAACCCAGAGTTCTGTATACCCAGTCACCATCCGAGAGTGGAAGGAGACTAAATACCCCTGAGATGTTCTCTATCCCTGAGTCCTTCAGATCCAAATTTTCTGCTGCTTCAGCCAGGTATAAGGAATCAATAACCAAAAGTACTCGTGGCCTTAAAGAGAAGTTAATTGCTCATAATGCCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGAATTGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTTTCCTCAAAGCGATCTAATTTTCCTCCCACTCCTGTTGGCACTGGGGGAAGTTCGGGATCCCCTGTAAAAGGAAAGTCAGTCGATGAGGATGACATTGACACTGGGCGTTCTCCTAGCATATACACTGAAAATGTGGTTCAGAATGTTAGCTCAGATGCTCCTTCAGTACCTGGCATGGTTGTTGGTCGAGTGGTTGCTGGTCGGGTGGAAATTCATCATTGTGTTCAGAGTGGAAAAGATGCTGCTGTGAGGACATAG 2934 0.4359 MAASGSGRISFSSFASLSRGATAGASGRRNLDFLKFSNGEFMAGKKLKRLELHQPRRRCNNDDNNNKISRVNGKIVSVISEVEAQLKELDYESKDPKTVLAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKIYILTQFNSCSLNRHISRSYSPGGVLTFGDGYVEVLAATQVPGQEGQSWFQGTADAVRQFHWLFEDPRARNIEDVLILSGDHLYRMNYMDLIQVHRESKADITLSCLPVDESRASDFGLMKTDKKGRVISFSEKPKGEDLKAMQVDTTLLGLSREEAEKKPYIASMGVYVFKKDLLLNLLRWRFPTANDFGSEVIHACASECCIKAFLFNDYWEDIGTIKSFFEANLALTENPSRFSFYEAGKPMYTSRRNLPPSNIDNSKIVDSIVSHGCFLTNSFIEHSVVGIRSRINSNVHLKDTVMLGADYFETEAEVAKLLAEGKVPVGIGENTKIKDCIIDKNARIGKNVIIANSEGVQEADRSSEGFYIRSGITIVSKNSRWIREAIKGEDNYRKQIVVVQNRRQSYSYRSRSFRVLHQSLLHHIVELTMENFTLSWSSSSSSTSPPSSSHIAGAAFDDYSEDFCSICLEPFGINDPSTITSCKHEYHLHCILEWSERSRECPICLQLLSFIDPSSQELLAAVEAEKCSRSRNIYPSSLTSSHIPHEQLNYDYGDSYSDESDIDDQIMQHLVAASSRSRFLHRRERQRSSSAGPSEVFVSNPPVHVPAVRPILTISPTGSSSPTSGVPSTVHIQPPTSAFPPVVGEVAGITTAENDVPFKPRVLYTQSPSESGRRLNTPEMFSIPESFRSKFSAASARYKESITKSTRGLKEKLIAHNASVKELSKGVQREMNAGIAGVARMIERLDLSSKRSNFPPTPVGTGGSSGSPVKGKSVDEDDIDTGRSPSIYTENVVQNVSSDAPSVPGMVVGRVVAGRVEIHHCVQSGKDAAVRT 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00470 977 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 3 524 - -
Aip04g00470 977 MobiDBLite consensus disorder prediction 895 913 - -
Aip04g00470 977 CDD LbH_G1P_AT_C 400 525 - -
Aip04g00470 977 Gene3D Hexapeptide repeat proteins 398 531 - -
Aip04g00470 977 SMART ring_2 609 649 IPR001841 -
Aip04g00470 977 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 579 654 IPR013083 -
Aip04g00470 977 SUPERFAMILY Nucleotide-diphospho-sugar transferases 97 493 IPR029044 -
Aip04g00470 977 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 99 496 IPR011831 GO:0005978|GO:0008878
Aip04g00470 977 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 81 397 IPR029044 -
Aip04g00470 977 MobiDBLite consensus disorder prediction 758 778 - -
Aip04g00470 977 SUPERFAMILY RING/U-box 601 656 - -
Aip04g00470 977 Pfam Ring finger domain 609 649 IPR001841 -
Aip04g00470 977 ProSiteProfiles Zinc finger RING-type profile. 609 649 IPR001841 -
Aip04g00470 977 Pfam Nucleotidyl transferase 101 378 IPR005835 GO:0009058|GO:0016779
Aip04g00470 977 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 105 124 IPR005836 GO:0005978|GO:0008878
Aip04g00470 977 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 3 524 IPR011831 GO:0005978|GO:0008878
Aip04g00470 977 MobiDBLite consensus disorder prediction 894 930 - -
Aip04g00470 977 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 311 321 IPR005836 GO:0005978|GO:0008878
Aip04g00470 977 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 196 204 IPR005836 GO:0005978|GO:0008878
Aip04g00470 977 MobiDBLite consensus disorder prediction 757 778 - -
Aip04g00470 977 SUPERFAMILY Trimeric LpxA-like enzymes 396 525 IPR011004 -
Aip04g00470 977 CDD ADP_Glucose_PP 101 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00470 Aip-Chr4 5531872 5540953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00470 593 657 C3H Transcription Factor Family AT4G00335 44.615 1.83e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00470 K00975 - gmx:100810451 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00470 04 5531872 5540953 Aip04g00470 04 5531872 5540953 ECH