Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00461 ATGATATCAGCAGAGGCTCCTATTATATTTTCCAAGGCTTGTGAAATGTTCATCATGGAATTGACAATGAGGGCTTGGAATAATGCTGAAGAGAACAAAAGGAGAACACTTCAGAAGAATGACATTGCTGCTGCAGTCACAAAAACTGATGTGTTTGATTTTCTTGTTGATGTTGTCCCTAGAGATGAAACCGTGGACCTTGGTTTATATGCTGGTATAAGAAGAGGTGGAGCCAATAATAATATTGTTCCTTGCTACTATTATGTGCCACCTCAGCATGTTATGGGTCCACCACCATATGGTCCTCCAAGAGTGCCTATGGTGGGAAGACATGTTCCTAATCAAGATAATATTGATGAGCAGCAAAATAGTGAAAATACTACTCATGCTATGTGTCCAAAGGAGCAAAATCATTCTTCAGATTCAGATGAATGA 435 0.3931 MISAEAPIIFSKACEMFIMELTMRAWNNAEENKRRTLQKNDIAAAVTKTDVFDFLVDVVPRDETVDLGLYAGIRRGGANNNIVPCYYYVPPQHVMGPPPYGPPRVPMVGRHVPNQDNIDEQQNSENTTHAMCPKEQNHSSDSDE 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00461 144 Gene3D Histone, subunit A 1 61 IPR009072 GO:0046982
Aip04g00461 144 MobiDBLite consensus disorder prediction 115 135 - -
Aip04g00461 144 MobiDBLite consensus disorder prediction 100 144 - -
Aip04g00461 144 Pfam Core histone H2A/H2B/H3/H4 1 46 IPR007125 GO:0003677
Aip04g00461 144 SUPERFAMILY Histone-fold 1 61 IPR009072 GO:0046982
Aip04g00461 144 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 141 - -
Aip04g00461 144 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00461 Aip-Chr4 5481730 5482273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00461 1 99 CCAAT-HAP5 Transcription Factor Family AT1G56170 62.000 1.66e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aip04g00461 Histone 6.5e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00461 - K08066 aprc:113855583 127.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00461 04 5481730 5482273 Aip04g00461 04 5481730 5482273 ECH