Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00445 ATGTCTCACATAGCTGTTGAGAGGAACAGGAGAAAGCAGATGAATGAACATCTCAAAGTTTTGAGATCCTTAACCCCATCTTTCTATATTAAAAGGGGAGATCAAGCGTCCATAATAGGGGGAGTTATAGAGTTCATCAAGGAGCTACACCAAGTGCTTCAAGCTTTGGAGTCCCAGAAAAGGAGAAAGAGCCTAAGCCCTAGCCCAGGCCCAAGCCCAAAAGCGCTGCAGCCGGCGTTTCAGCAGAACGATAGCCCCACCGGAATGGGTGGTGGTTCCTTTAAGGAACTAGGAGCAAGTTGCAACTCTTCAGTTGCGGATGTGGAAGTTAAAATCTCAGGTTCTAATGTGATCCTGAGAGTAATTTCCCACAGGATTCCGGGTCAAGTTGCAAAGATCATTGCTGTTTTAGAAGCACTTTCCTTCGAAGTTCTTCATCTCAACATCAGTAGCATGGAGGATACAGTTCTCTACCATTTTGTTGTTAAGGAAGCTTCTGGAGGCACTAGAACGACGGCGAGGAGAACAAGCATGTTGACGATGGCGAGAAGAACAGGGCTGAGTAGACGTTCGCGATGCCAGAAGCTTCAGAGTTCAGAGTTCAAGATGACGACGCCGCTGGCAGCTGCTTCGATCCGCGACGGTGGCAGTTTCGCTGATAGAAGCTCCAATTCGGCGTCAATTGTGGTAGTGACGGTGGAGTTTGTTGGAGGAAGTTAG 720 0.4806 MSHIAVERNRRKQMNEHLKVLRSLTPSFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPKALQPAFQQNDSPTGMGGGSFKELGASCNSSVADVEVKISGSNVILRVISHRIPGQVAKIIAVLEALSFEVLHLNISSMEDTVLYHFVVKEASGGTRTTARRTSMLTMARRTGLSRRSRCQKLQSSEFKMTTPLAAASIRDGGSFADRSSNSASIVVVTVEFVGGS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00445 239 PANTHER TRANSCRIPTION FACTOR MUTE 1 163 - -
Aip04g00445 239 SMART finulus 4 55 IPR011598 GO:0046983
Aip04g00445 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Aip04g00445 239 MobiDBLite consensus disorder prediction 75 89 - -
Aip04g00445 239 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Aip04g00445 239 PANTHER TRANSCRIPTION FACTOR FAMA 1 163 IPR044283 GO:0003700|GO:0010052
Aip04g00445 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 67 IPR036638 GO:0046983
Aip04g00445 239 MobiDBLite consensus disorder prediction 60 94 - -
Aip04g00445 239 Gene3D - 1 64 IPR036638 GO:0046983
Aip04g00445 239 CDD bHLH_AtFAMA_like 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00445 Aip-Chr4 5330114 5335680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00445 1 163 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 65.517 2.12e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip04g00445 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00445 - - aip:107635887 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00445 04 5330114 5335680 Aip04g00445 04 5330114 5335680 ECH