Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00425 ATGTCAAGTCCTCAGTGTTTTGAGAATCCACCAAACCTGAACTCAGGTGTCCATGGCTCAGGGAATATCCAAGAACTTGGTGGTGTTAAATCCTATGTCACTGGTCCCCATGATTCCAAGTTGGCACTTATACTAATCTCTGATGTATTTGGATATGAAGCACCAAATCTAAGGAAACTCGCCGACAAAATGGCAGCAGCCGGATTCTTGGTGGTTGTTCCTGATCTTCTGTATGGAGACTACTTTGATCTTGAAAATCCTCAGTTCGACCGAGCTGCATGGCTACGAGCTCATGGGACGGATAAGGGATGTGAGGATGCCAAACCTTTATTTTCTGCTCTAAAGAGTAAAGGTGTTACAGCCATAGGAGCTGCAGGCTTCTGCTGGGGAGGGGTGGTGGTTGTGAAATTGGCAAATTCCAGTGACATTGACATGCAGGCTGCAGTTATTTTGCATCCTGGTCCAATCCCAGATGATGAATACAGTGAGATCAAGGTTCCTGTAGCTCTATTGATGGCTGAAAATGACAATTGTTATACACCAGAGAAAGCAAAGCAAATTGGTGAGATGTTGTCTGCAAAACCAGAGTTAGAGAGCTTTGTGAAGATATACCCGGGTGTGTCTCATGGATGGACAGTGAAGTACAAAGTTGATGATGAAGGAGCTGTGAAGAGTGCTGAAGAGGCACACCATGACATGTTGAATTGGTTTATCCACCATGTCAAAGTCCCATGCTCGTTTTTATACTCCGACTCTCCTAATTTTCGTTTCCTTCTTCTGCACCCGGCGCCGTTTCTGAGGTTTCAGTTTTGCCTTGCGACAATGGTGAGGGTTAGTGTCTTGAATGATGCTCTCAAGAGCATGTACAATGCCGAGAAGCGAGGGAAGCGCCAGGTCATGATTAGGCCATCATCAAAAGTGATTATTAAGTTCCTTTTGGTGATGCAGAAGCATGGGTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGGCTGGAAAAATTGTGGTTGAATTGAATGGAAGACTGAACAAATGTGGGGTTATCAGTCCCCGTTTTGATGTTGGTGTCAAAGAGATTGAAAGCTGGACTGCTAGGCTGCTCCCTTCAAGACAGTTTGGGTACATTGTGTTGACTACCTCTGCCGGCATCATGGATCATGAAGAGGCAAGGAGAAAGAATGCTGGTGGTAAAGTGCTGGGTTTCTTTTACTAG 1215 0.4519 MSSPQCFENPPNLNSGVHGSGNIQELGGVKSYVTGPHDSKLALILISDVFGYEAPNLRKLADKMAAAGFLVVVPDLLYGDYFDLENPQFDRAAWLRAHGTDKGCEDAKPLFSALKSKGVTAIGAAGFCWGGVVVVKLANSSDIDMQAAVILHPGPIPDDEYSEIKVPVALLMAENDNCYTPEKAKQIGEMLSAKPELESFVKIYPGVSHGWTVKYKVDDEGAVKSAEEAHHDMLNWFIHHVKVPCSFLYSDSPNFRFLLLHPAPFLRFQFCLATMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNAGGKVLGFFY 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00425 404 Pfam Ribosomal protein S8 281 404 IPR000630 GO:0003735|GO:0005840|GO:0006412
Aip04g00425 404 PANTHER ENDO-1,3-1,4-BETA-D-GLUCANASE-LIKE PROTEIN 1 242 - -
Aip04g00425 404 Gene3D alpha/beta hydrolase 27 240 IPR029058 -
Aip04g00425 404 PANTHER DIENELACTONE HYDROLASE 1 242 - -
Aip04g00425 404 SUPERFAMILY alpha/beta-Hydrolases 31 240 IPR029058 -
Aip04g00425 404 SUPERFAMILY Ribosomal protein S8 278 404 IPR035987 GO:0003735|GO:0005840|GO:0006412
Aip04g00425 404 Hamap 30S ribosomal protein S8 [rpsH]. 276 404 IPR000630 GO:0003735|GO:0005840|GO:0006412
Aip04g00425 404 Pfam Dienelactone hydrolase family 30 239 IPR002925 GO:0016787
Aip04g00425 404 ProSitePatterns Ribosomal protein S8 signature. 374 391 IPR000630 GO:0003735|GO:0005840|GO:0006412
Aip04g00425 404 Gene3D - 344 404 - -
Aip04g00425 404 Gene3D - 275 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00425 Aip-Chr4 5005088 5011858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00425 275 404 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.154 2.39e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00425 - K01061 gmx:100813473 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00425 04 5005088 5011858 Aip04g00425 04 5005088 5011858 ECH
Aip01g02709 01 127944565 127945905 Aip04g00425 04 5005088 5011858 PCT