Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00412 ATGATTTTGAAGGAGAACCCTGTAGGTACTGAGCTTGCAATGAGTAATATCAATGTGGAGGAGGAAATAGATTTTTCATGTGAACCGTACATTGGTTTGGAATTTGACTCACCGGATGATGCACTCAAGTTCTACACGTCATATGCAAATCGAGTTGGATTTAAAGTTCGGATTGGTCAGCTGTATCGATCAAGATCAAATGGGTCAGTTTCTTCTCGAAGATATGTGTGCTCAAAGGAGGGATATCAGCTCAGTTCGAGAACAGGTTGTCCAGCATTCATAAGAGTGCAAATAAATGCTTCTGGAAAGTGGGTTGTTGATCATTTCCAAAAGGATCACAATCATGATCTTGAAATTGAAAATGGAAATTGCACACCAACAGTGCAGCAGAAAGGTGCTGCAGCTTTCAAGTCCTTTACTGAAGTATCCCGTAGGCCAAGGAAGAAATTGCTTGAATCCTGTAATGAATCTTCTGGTCCCATGGGCATTATTGATTTCAAGCGACTGAGAAAGGAAGAACTCGAAGGACAGTTCCGAACTGAACCATATGTAGGTCAAGAGTTTGGTTCACCCAATGAAGCCTACCAATTTTATCATGCATATGCAGCATATGTTGGTTTTGGAGTTCGAATTGGTCAATTATTTCGTTCTAAGAATGATGGATTGATCACATCCCGCCGATTTGTGTGCTCAAAAGAAGGGTTCCAGCACCCTTCACGGGTTGGGTGCGGGGCCTATTTGAGGATTAAGAGACAGCCATCGGGAAAGTGGGTGGTGGACCGTCTCCACAAAGATCATAATCATGATTTGGGCTCTGAAAGGGAGGGTAGGCCAAAAAGTATTCCTGATTCCAATATTTTGGCTGAAGAGGTAGATACTGGATTTGTAAATGGTGATTTATTTCGGATAGACAACTATCCTGTCCCCAGAGGAACTAGACAAAATCACATTAAAAGTGATTGGTACAGCATGCTTCTAGAGTATTTTCAATCAAGACAAGCAGAAGATACAGGATTCTTTTATGCTGTGGAAGTTGACAATGGTAACTGTATGAGCCTATTTTGGGCTGATGGCAGATCTAGATATTCATGTAGTCAGTTTGGTGATGTCCTTGTTATTGACACTTCCTACCGTAAGAGTGTCTATTTGGTGCCGTTTGCCAcctttattggagttaaccatcacaggcaacctgtgcttcttggaagtgctttgattgctgatgaatctgaagagtctttcgcgtggttatttcaGACATGGCTGAGGGCAGCATCTGGCCGGCAGCCTCTATCGATAATTGCTGATCAGGACATTGCAATCCAGAGGGCAATAAGAAAAGTCTTTCCAAGAACCCATCATCGCTTTTCATTGTGGCAAATCAAGGCAAAGGAACAAGAGAATTTGGGTATAATGGGTGATGGATTTACAAAAGATTATGACAAATGCATTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGGCTGCCTTACTCAACAAATATGGACTGAAGGACAATCCTTGGCTAAAAGAAATGTATGAGAAGCGGGCATCCTGGGTTCCATTATATTTAAGGGGCACATTTTTTGCTGGCATACCCATGAATGAAAGTGTTGATTCATTCTTTGGTGCAATTTTAAATGGCCAAACGTCTCTCGTGGAATTTATTCCAAGGTATGAAAGAGGTCTTGAGCGACGCCGGGAGGAAGAAAGAAACGAGGATTTCAATACTTCTAATTTTCAACCATTTTTGCAAACAAAGGAGCCAGTTGAAGAACAATGTAGAAGGCTTTACACTCTTACCATATTCAAAGTACTTCAAAAAGAGCTTTTGCAGTGCTATAGTTATCTTGGGTTTAAAGCTTTTCAAGAAGGGAGCATCAGCCGATATATGGTGCGTAAGGGAGGAAATGATATGGAGAAACACCATATAGTTACATTTAATGCATCTAATCTTAGCATTAGTTGTAGCTGTCAGATGTTTGAATATGAAGGTGTTCTTTGTAGACATGCTTTGAGGGTTTTCCAGATACTGGAATTAAGAGAAGTTCCTTCTCGCTACATCTTGCACAGATGGACTAAAAATGCTGAGGATGGTGTTTTCCCTGATTTAGAGTCATGGAGTAGTTCTCAGGAACTCCGGAGTTTGATGCTATGGAGTCTAAGAGAAACTGCGGCTAAGTACATAGATGCAGGTGCAACATCTATTGAAAAGTATAAACTTGCTTATGAGATTTTGCGTGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA 2283 0.3955 MILKENPVGTELAMSNINVEEEIDFSCEPYIGLEFDSPDDALKFYTSYANRVGFKVRIGQLYRSRSNGSVSSRRYVCSKEGYQLSSRTGCPAFIRVQINASGKWVVDHFQKDHNHDLEIENGNCTPTVQQKGAAAFKSFTEVSRRPRKKLLESCNESSGPMGIIDFKRLRKEELEGQFRTEPYVGQEFGSPNEAYQFYHAYAAYVGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWVVDRLHKDHNHDLGSEREGRPKSIPDSNILAEEVDTGFVNGDLFRIDNYPVPRGTRQNHIKSDWYSMLLEYFQSRQAEDTGFFYAVEVDNGNCMSLFWADGRSRYSCSQFGDVLVIDTSYRKSVYLVPFATFIGVNHHRQPVLLGSALIADESEESFAWLFQTWLRAASGRQPLSIIADQDIAIQRAIRKVFPRTHHRFSLWQIKAKEQENLGIMGDGFTKDYDKCIYQSQTVDEFDATWAALLNKYGLKDNPWLKEMYEKRASWVPLYLRGTFFAGIPMNESVDSFFGAILNGQTSLVEFIPRYERGLERRREEERNEDFNTSNFQPFLQTKEPVEEQCRRLYTLTIFKVLQKELLQCYSYLGFKAFQEGSISRYMVRKGGNDMEKHHIVTFNASNLSISCSCQMFEYEGVLCRHALRVFQILELREVPSRYILHRWTKNAEDGVFPDLESWSSSQELRSLMLWSLRETAAKYIDAGATSIEKYKLAYEILREGGRKLCWHR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00412 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 23 121 - -
Aip04g00412 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 150 756 - -
Aip04g00412 760 Pfam MULE transposase domain 370 463 IPR018289 -
Aip04g00412 760 Pfam FAR1 DNA-binding domain 196 270 IPR004330 -
Aip04g00412 760 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Aip04g00412 760 SMART 26again6 657 684 IPR006564 GO:0008270
Aip04g00412 760 Pfam SWIM zinc finger 653 679 IPR007527 GO:0008270
Aip04g00412 760 ProSiteProfiles Zinc finger SWIM-type profile. 646 682 IPR007527 GO:0008270
Aip04g00412 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 23 121 IPR031052 GO:0006355
Aip04g00412 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 150 756 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00412 Aip-Chr4 4859656 4861938 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip04g00412 MULE 3.7e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00412 - - gmx:100816656 1318.14