Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00400 ATGGGCTGTGTCAATGGCAAGTGTTGTAACCGGTACCCTACACCGTCAGAGGGTGGCTCCAGAGACTACAGAGAACTTGGCCCTTACCGTGCACAAAGGAAGCACATACTCACTCAGAGACCATTGGAGGTAGCTACTGTTCCTTCACATAACTTCACTTTGGAGTATTCTGTTCTAACCCAGAGAGGATACTACCCTGATTCACCTGAAAAGGAAAACCAAGATAGTTTCTGCATTAGGAATCAGATTCAAGGTAACCCCAGTGTCCATTTCTTTGGTGTGTATGATGGTCATGGTCAATTTGGTGGACAGTGTGCAAACTTTGTTAAGGATAGGTTAGTAGAAACATTGTCTAGTGACCCTGCATTGTTGGAGGACCCTGTTAAGGCTTACACTTCTGCATTCTTAACAACGAATTACGAACTGCATAACAGTGATGTTGATGATTCAATGAGTGGTACCACTGCAATTACAGTGCTTGTTATTGGTGATACCCTTTATGTAGCTAATGTTGGTGACTCAAGAGCAGTGCTAGCTGTTAAGGACGGGAATAGAATTATTGCTGAGGACTTGTCCTCGGATCAGACACCGTTCCGGAGAGATGAATATGAGAGAGTGAAGCTTTCTGGGGCAAGGGTGTTGAGTGTTGATCAGGTAGAAGGGCTTAAGGATCCAAATATCCAAACTTGGGGTGACGAAGAGAGTCAGGGTGGCGATCCTCCAAGGTTGTGGGTTCAAAATGGAATGTATCCTGGAACTGCTTTTACAAGGAGTGTTGGGGATAATTTGGCAGAGACTATCGGTGTCATTGCTGTTCCTGAGGTGTCAACAGTCCAGCTTACACCGAATCATCTATTCTTTGTTGTTGCAAGTGATGGGATATTTGAGTTCCTATCAAGCCAAACTGTTGTTGACATGGCAGCAAGCTATTCAGATCCCCGTGATGCATGTGCCGCCATTGCTGGAGAGTCATATAAACTATGGTTGGAACATGAGAACCGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGCCTGTCAAATGTTCATCTCAAGTTGGATCAGGTGACATCAATGCCAGTATGTTAA 1095 0.4411 MGCVNGKCCNRYPTPSEGGSRDYRELGPYRAQRKHILTQRPLEVATVPSHNFTLEYSVLTQRGYYPDSPEKENQDSFCIRNQIQGNPSVHFFGVYDGHGQFGGQCANFVKDRLVETLSSDPALLEDPVKAYTSAFLTTNYELHNSDVDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIIAEDLSSDQTPFRRDEYERVKLSGARVLSVDQVEGLKDPNIQTWGDEESQGGDPPRLWVQNGMYPGTAFTRSVGDNLAETIGVIAVPEVSTVQLTPNHLFFVVASDGIFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHENRTDDITIIIVQIKGLSNVHLKLDQVTSMPVC 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00400 364 Pfam Protein phosphatase 2C 73 320 IPR001932 -
Aip04g00400 364 SUPERFAMILY PP2C-like 41 347 IPR036457 -
Aip04g00400 364 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Aip04g00400 364 CDD PP2Cc 71 345 IPR001932 -
Aip04g00400 364 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Aip04g00400 364 Gene3D - 40 347 IPR036457 -
Aip04g00400 364 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 23 355 - -
Aip04g00400 364 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 23 355 - -
Aip04g00400 364 SMART PP2C_4 51 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00400 Aip-Chr4 4746298 4749550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00400 1 350 PP2C-type Phosphatase Gene Family AT3G06270 74.221 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00400 - - aprc:113872580 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00400 04 4746298 4749550 Aip04g00400 04 4746298 4749550 ECH