Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00388 ATGACTCTGAGCCATGAGCGGCGGGAATCACATCCTTCGCCGAGCAATGGCATCCACAGCCACAACAGCAATGGCAGTTTCGAGAAAAAGCCAACATTTGCAAAGCATTCTATTTCAATAAGATCAAGAAGACATAAACCCGGTTTCTCTGATTCCTTTTCAAGCATTGACTTGAATGGATTAGACACTGAAGAAGGTGGTGGTGGAGGATGTTTAACAGATTACTCTACAAGCAGTGTAGGATCAAGAACACCTTCATCTTCAAGAGCAAGCACTTCTGATTCTGAGGCTCTACCAGGTAGTGGTGGTTCCAATGCTAACAACCAATGGCGTGGTTTCTTCAAGCTTCTCAAGAAAGGCTCACAGATGCCATTTCAACCATTTCACCCTCTTAAGAAGAATGTTCCTAAGTTAACTAGAAGGAAGAGTAAGAGGGTTAGAGAGGATCTCATTCCTTCTTCTTTTGACTCTGAGTTTGCCAACTTCAAATCTTCATGGAAGAATTTCACTCTCTCTGAACTCCAGGCTGCAACTGATGACTTCAGCCATGATAATGTGATTGGGGAGGGAGGGTATGCAGAGGTATACTTAGGAAAATTGGAAGATGGAAACTTTGTTGCCATAAAGAAGCTTACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTTTTGTCTGAGCTTGGAATCATAGTTCATGTGGACCATCCAAACATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTCCTTGTTCTTCAGCTCTCTCCACATGGCAGCTTATCATCCATACTTTATGGGCCTAGAGAGAAGCTCAATTGGAGTCTCAGATTTAAGATTATTTTGGGAACTGCCGAGGGACTTTGCTATCTTCATGAGGGATGTCAAAGAAGGATCATTCACAAGGATATCAAGGCTTCTAATATTCTTCTCTCTGAGACTTTTGAGCCTCAGATATCTGATTTTGGCCTAGCAAAGTGGTTACCTGACCAATGGACTCACCATACTGTTTCCAAAGTAGAAGGCACATTCGGGTACCTTCCCCCTGAATTCTTCATGCATGGAATAGTAGATGAGAAAACTGATGTATATGCTTATGGTGTGCTATTATTGGAGCTAATCACTGGAAGACAAGCTTTGGATAGCTCACAAAAAAGTCTTATCATGTGGGCAAAGCCTTTGTTAATTGCAAACAACATCAAAGAGCTTGTTGATCCAGTTCTTGAAGACAATTATGATGAAGAGCAGATGGACCTTGTGATCTTAACAGCTTCTCAGTGTGTAGAACAATCCTCGGCTCAACGGCCTCTTATGAGCGAGGTGCTACAAATATTAAGAGGTGATGAAGAGAGCTTGAAGTGCATCAAAGAAAGACAAAAGTCAAAAATTCAAAGAACATACTCTGAAGAACTCTTGGATGCAGATGAATACAATTCTAAGCAAAAGAGCCAAAGAGCACGCCATATGGAGTTTATTCTAAGCAGTAACTCACCCACACAAGAAACGGAACAAAATTGA 1521 0.4149 MTLSHERRESHPSPSNGIHSHNSNGSFEKKPTFAKHSISIRSRRHKPGFSDSFSSIDLNGLDTEEGGGGGCLTDYSTSSVGSRTPSSSRASTSDSEALPGSGGSNANNQWRGFFKLLKKGSQMPFQPFHPLKKNVPKLTRRKSKRVREDLIPSSFDSEFANFKSSWKNFTLSELQAATDDFSHDNVIGEGGYAEVYLGKLEDGNFVAIKKLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRFKIILGTAEGLCYLHEGCQRRIIHKDIKASNILLSETFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLIMWAKPLLIANNIKELVDPVLEDNYDEEQMDLVILTASQCVEQSSAQRPLMSEVLQILRGDEESLKCIKERQKSKIQRTYSEELLDADEYNSKQKSQRARHMEFILSSNSPTQETEQN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00388 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Aip04g00388 506 ProSiteProfiles Protein kinase domain profile. 181 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00388 506 MobiDBLite consensus disorder prediction 15 30 - -
Aip04g00388 506 MobiDBLite consensus disorder prediction 489 506 - -
Aip04g00388 506 SUPERFAMILY Protein kinase-like (PK-like) 166 467 IPR011009 -
Aip04g00388 506 PANTHER OS08G0249100 PROTEIN 43 483 - -
Aip04g00388 506 Gene3D Phosphorylase Kinase; domain 1 154 255 - -
Aip04g00388 506 MobiDBLite consensus disorder prediction 1 106 - -
Aip04g00388 506 MobiDBLite consensus disorder prediction 72 106 - -
Aip04g00388 506 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 43 483 - -
Aip04g00388 506 MobiDBLite consensus disorder prediction 479 506 - -
Aip04g00388 506 ProSitePatterns Protein kinases ATP-binding region signature. 187 210 IPR017441 GO:0005524
Aip04g00388 506 Pfam Protein tyrosine and serine/threonine kinase 184 445 IPR001245 GO:0004672|GO:0006468
Aip04g00388 506 Gene3D Transferase(Phosphotransferase) domain 1 258 474 - -
Aip04g00388 506 SMART serkin_6 181 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00388 Aip-Chr4 4666397 4669283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00388 149 480 Trihelix Transcription Factor Family AT5G38560 39.548 1.41e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aip04g00388 PK_Tyr_Ser-Thr 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00388 - - gmx:100776081 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00388 04 4666397 4669283 Aip04g00388 04 4666397 4669283 ECH
Aip04g00388 04 4666397 4669283 Aip06g00988 06 14099150 14104645 ECH
Aip04g00388 04 4666397 4669283 Aip09g01780 09 46316632 46329931 ECH
Aip04g00388 04 4666397 4669283 Aip06g00262 06 3061699 3063751 ECH
Aip04g00388 04 4666397 4669283 Aip02g02858 02 104747761 104752240 ECH