Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00379 ATGCAAGCAGCTCAAGCAGCAGCCACTGATGAAGTCTCTGAGATTTCACCCCAGATTAACCACTGTTCGAACAAAGAAGTTTCAGATAATAGACCGAGTGGGAAACGTCCCGATATTTCACTTCAAGTTCCACCTAGACCTGTAGGGTTTGGCAGTGGAAGGGCTTTGGACCATTCTCAAAGTTTTTCCAAAGGGATATCATCATCAAGAGGTTTTTTGAGGGCATTGAGCTTGAAAAGAAAAGCTAATGTAACAGATGGCGAAAGAAGCTGCCTCCTTAATTCAGACTCGAAGACATCTGCGGACAGTTCTAATATGGACTCCATATCTGACGCTGCATGGAAAAGATGCACTTCTCTTCCTGTTACTCCTGCATCAAATCTGTCTCCTTCGGTTTCAACACCTGTTTCTGCAAGGACTTATACTGGACAGAAGCAACATAAGGATGTTGGTCGTTCCAAGGTTTCAAGGTCCCTTTCTGTACCTGGGAGAAATGTTGTTATTGTAAGATCCATCTCCTTTTCTACCCGTAGTGAACAGGATCAGCAAGATACAAATGATGATCAGATAACTCCCGTGCCACCAGAAGGTGCTGATGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTCTTGATGTCTGCGATGAAAGAAATACCTTGAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATAAAATGGTTTAGCACAAAGGGAAATAAGAAATGTGAAGTATGTGGGCACGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTTTCCAGCTCTGTTCAACGGCAAAGTAGACAAGTGCAGGGTCAACTGAACTCAAGTTCAGAGTCAATAAATGCCTGGCAAGACTTTGTGGTGCTCGTCCTGATAAGCACAATATGCTACTTTTTCTTCATTGAACAGCTCCTGCTTCCTGAGTTGAAGACTCAAGCCATCATAATAGCAGCACCATTTGCCTTTACATTGGGCCTCCTGGCATCTATTTTTGCAGTCATCCTTGCAATTAGAGAGTATATATGGACATATGCTGCTCTTGAGTTCGCTCTTGTGGCTATAACCGTGCATCTGTTTTATACCATGTTGCATTTGAAGGCCATCTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGAGCCTCAACTATTTATATATCCAATATGTTAATTGGAGACTTCAGGTCTCTCATAGTGATAACCTCCCAGTTTGA 1260 0.4238 MQAAQAAATDEVSEISPQINHCSNKEVSDNRPSGKRPDISLQVPPRPVGFGSGRALDHSQSFSKGISSSRGFLRALSLKRKANVTDGERSCLLNSDSKTSADSSNMDSISDAAWKRCTSLPVTPASNLSPSVSTPVSARTYTGQKQHKDVGRSKVSRSLSVPGRNVVIVRSISFSTRSEQDQQDTNDDQITPVPPEGADDEEIPEEEAVCRICLDVCDERNTLKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGHEVQNLPVTLLRVSSSVQRQSRQVQGQLNSSSESINAWQDFVVLVLISTICYFFFIEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIREYIWTYAALEFALVAITVHLFYTMLHLKAIYAILLSSVLGFGIAMSLNYLYIQYVNWRLQVSHSDNLPV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00379 419 PANTHER ZINC FINGER PROTEIN 1 416 - -
Aip04g00379 419 Pfam RING-variant domain 210 256 IPR011016 GO:0008270
Aip04g00379 419 MobiDBLite consensus disorder prediction 175 203 - -
Aip04g00379 419 PANTHER OS02G0165000 PROTEIN 1 416 - -
Aip04g00379 419 MobiDBLite consensus disorder prediction 1 65 - -
Aip04g00379 419 MobiDBLite consensus disorder prediction 124 158 - -
Aip04g00379 419 ProSiteProfiles Zinc finger RING-CH-type profile. 202 263 IPR011016 GO:0008270
Aip04g00379 419 SMART ringv_2 209 257 IPR011016 GO:0008270
Aip04g00379 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 265 IPR013083 -
Aip04g00379 419 MobiDBLite consensus disorder prediction 1 27 - -
Aip04g00379 419 MobiDBLite consensus disorder prediction 124 144 - -
Aip04g00379 419 CDD RING_CH-C4HC3_MARCH 210 257 - -
Aip04g00379 419 MobiDBLite consensus disorder prediction 175 190 - -
Aip04g00379 419 SUPERFAMILY RING/U-box 206 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00379 Aip-Chr4 4519931 4524141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00379 223 317 C3H Transcription Factor Family AT5G59000 32.292 6.61e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00379 - - gmx:100527094 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00379 04 4519931 4524141 Aip04g00379 04 4519931 4524141 ECH