Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00365 ATGATAAGGAGCATAATCCAAGACATGAGGTCTCGTTCTCACCGCGTGGTTCAGGACTTGTCTTCCATGGAAGAAGATTCAGCACTTTCAGAGTTGATCTCCGACGATGGGTTGAGGCAGAGTTGCTGGGCGCAGATGCCGCAGGAGCTGCTCAGAGAGCCTGGTCCAAGGGAGCATCTCCTCCAGTGCTTTATAAGGCGCAACCGGTCCACCCAAACATACTATTTGTATCTTAGCTTATCTAATACACTATCTGAAGATGGCAAGTTCCTTTTGGCTGCACGCAAATGCAGACGTCCCACCTGCACAGATTATATCATCTCTCTGCATGCAGACGACATGTCAAAGGGAAGCAACACCTATGTTGGAAAACTGAGATCAAATTTTCTCGGAACCAAGTTCACAATCTATGATGGGCAGCCTCCCCATGCCCGGGCAAAGATTACAAAAAGTCGCTCCACCAGGCTGGTGAATTTAAAACAAGTTGCACCCAAGGTTCCTACAGGCAATTATCCAGTGGCTCACATATCATATGAATTGAATGTGCTAGGCTCTAGGGGGCCTAGGAGAATGAACTGCATCATGGATTCCCTTCCTGCTTCAGCAATTGAACCGGGAGGGGTGGCCCCTACACAGACCGAGTTTTCCCTCAGCAATGCAGATATGTTCCCCACATTCCCTTTTTTTCGATCGAGGTCAAATCGTGTTGACAACTCCCTTTCTGGACCCCTGGCTGATCAAAAGGATGGGGTTCTGGTGTTAAAAAACAAGGCTCCCAGGTGGCACGAGCAGCTGCAGTGTTGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGA 840 0.4881 MIRSIIQDMRSRSHRVVQDLSSMEEDSALSELISDDGLRQSCWAQMPQELLREPGPREHLLQCFIRRNRSTQTYYLYLSLSNTLSEDGKFLLAARKCRRPTCTDYIISLHADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHARAKITKSRSTRLVNLKQVAPKVPTGNYPVAHISYELNVLGSRGPRRMNCIMDSLPASAIEPGGVAPTQTEFSLSNADMFPTFPFFRSRSNRVDNSLSGPLADQKDGVLVLKNKAPRWHEQLQCCISGICNLPQQL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00365 279 SUPERFAMILY Tubby C-terminal domain-like 48 267 IPR025659 -
Aip04g00365 279 Gene3D Tubby Protein; Chain A 47 271 IPR025659 -
Aip04g00365 279 PANTHER TUBBY-RELATED 3 53 - -
Aip04g00365 279 PANTHER TUBBY-RELATED 51 267 - -
Aip04g00365 279 PRINTS Tubby superfamily signature 170 197 IPR000007 -
Aip04g00365 279 PRINTS Tubby superfamily signature 121 145 IPR000007 -
Aip04g00365 279 PRINTS Tubby superfamily signature 105 121 IPR000007 -
Aip04g00365 279 PRINTS Tubby superfamily signature 254 271 IPR000007 -
Aip04g00365 279 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 3 53 - -
Aip04g00365 279 Pfam Tub family 51 267 IPR000007 -
Aip04g00365 279 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 51 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00365 Aip-Chr4 4375221 4378048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00365 10 267 TUB Transcription Factor Family AT2G47900 55.096 7.93e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aip04g00365 Tub 3.7e-66 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00365 K19600 - gmx:100815464 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00365 04 4375221 4378048 Aip04g00365 04 4375221 4378048 ECH