Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00360 ATGGCTTCAAATCAGATTCAGTCATCTACTACAATTCATGCAGGGGCAACCAATGATGCTTTATACAAGGAACTGTGGCATGCCTGTGCTGGACCTCTTGTCACTCTTCCTCGTGAAGGGGAAAGGGTTTATTACTTTCCACAAGGTCATATGGAACAGCTCGAGGCATCTATGAATCAAGGTTTAGAGCAGCAAATGCCTTCCTTTAATCTTCCATCTAAGATACTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAACCTGAAACCGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGGTAAGCCCTGATGATCCTCTGCCTGAGCCACCAAGGTGTACAGTCCATTCATTTTGCAAGACACTTACCGCTTCTGACACCAGCACCCATGGAGGTTTCTCTGTTCTTCGAAGACATGCGGATGATTGTCTGCCACCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGGCATATTTTTCGAGGGCAACCAAGACGCCACTTACTGACAACTGGTTGGAGTGTCTTCGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTCCGAGTAGGAGTTAGGAGGCTCATGAGACAGCAAAACAACATGCCATCTTCGGTTATATCCAGTCACAGCATGCATCTCGGTGTTCTGGCTACTGCATCTCACGCCATTGCCACCGGAACACTGTTTTCAGTATTTTACAAACCCAGAACAAGCCGGTCGGAGTTTATTGTGAGTATCAATAAATATCTTGAAGCTCGAAATCATAAACTCTCAGTTGGTATGAGATTCAAAATGAGATTTGAAGGTGATGAGGTTCCTGAAAGAAGGTTCAGTGGGACAATTGTTGGCGTTGGAGATAGCACATCATCAGTTTGGGCTGATTCTGAGTGGCGATCGTTGAAGGTTCAATGGGATGAACCATCGTCAATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACCACCCCAGCAAACTCCCAGCCAGCCCAAAGAACAAAGAGATCGCGGCCTCCCATCCTGCCTTCACCAATGCCTGATTCATCAATGCAAGGTGTATGGAAACCACCAGTTGAATCTCCATCTTTCTCCTATCGCGAACATGGCCGAGACCTCTATCCATCACCTAAATTCAATTCTAATGCAGCCAAATTTCTTGGTTTTGGCGGGAATATCTCTGCACCCAACAAGTCCATATATTGGTCTAATAGGATGGAAAACTCTACAGAATCATTTTCACCTATAGCACTTAAAGAATCTGCTGAAAAGAGACAAGGCACTGGAAATGGCTGTAGACTCTTTGGAATTCAGTTACTTGACAATGCTCATGCAGAAGAAAGTTTGCCAACTGTCATCTTGTCAGGAAGGGTGGGTGATGATAGGTCTGTTCCATCTTTGGATGGTGAGTCTGATCAGCAGTCTGAACCATCAAATGTTAATCAATCGGATATTCCTTCTGCAAGTTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAAAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGACTTGACAAGGTTTGATGGATATGAGGATCTGCTTTGGAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTCTGTGGATCTGAAAAGAAGTGGCAGGTTGTCTACACTGATAATGAAGATGACATGATGATGGTTGGAGATGATCCATGGCTTGAGTTCTGTAGTGTCGTGAGGAAAATTTTCATCTACACAGTAGAAGAGGTGAAGAAACTTTCACCGAAAATTGGACTTCCAATTAATGAAGTGGTTAAACCAAGCAAACTGGATGCTGAAGCAGGTGTTAATCCAGAGGATCAGTCATCCGTTGTGGGGCCTGGTTGCTAG 2013 0.4451 MASNQIQSSTTIHAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVVSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDSTSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTTPANSQPAQRTKRSRPPILPSPMPDSSMQGVWKPPVESPSFSYREHGRDLYPSPKFNSNAAKFLGFGGNISAPNKSIYWSNRMENSTESFSPIALKESAEKRQGTGNGCRLFGIQLLDNAHAEESLPTVILSGRVGDDRSVPSLDGESDQQSEPSNVNQSDIPSASCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLWKLEEMFDIKGELCGSEKKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTVEEVKKLSPKIGLPINEVVKPSKLDAEAGVNPEDQSSVVGPGC 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00360 670 MobiDBLite consensus disorder prediction 358 394 - -
Aip04g00360 670 MobiDBLite consensus disorder prediction 358 372 - -
Aip04g00360 670 Gene3D - 123 228 IPR015300 -
Aip04g00360 670 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Aip04g00360 670 ProSiteProfiles PB1 domain profile. 546 639 IPR000270 GO:0005515
Aip04g00360 670 SMART B3_2 126 228 IPR003340 GO:0003677
Aip04g00360 670 SUPERFAMILY DNA-binding pseudobarrel domain 115 255 IPR015300 -
Aip04g00360 670 SUPERFAMILY CAD & PB1 domains 548 623 - -
Aip04g00360 670 Gene3D - 289 362 - -
Aip04g00360 670 Gene3D - 541 635 - -
Aip04g00360 670 MobiDBLite consensus disorder prediction 505 524 - -
Aip04g00360 670 Pfam AUX/IAA family 593 636 IPR033389 -
Aip04g00360 670 Pfam AUX/IAA family 543 582 IPR033389 -
Aip04g00360 670 PANTHER AUXIN RESPONSE FACTOR 9 9 649 - -
Aip04g00360 670 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Aip04g00360 670 MobiDBLite consensus disorder prediction 497 524 - -
Aip04g00360 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 649 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip04g00360 670 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip04g00360 670 CDD B3_DNA 124 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00360 Aip-Chr4 4333722 4338135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00360 14 664 B3 DNA Binding Superfamily AT1G59750 72.824 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip04g00360 B3 7.3e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00360 K14486 - gmx:100793224 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00360 04 4333722 4338135 Aip04g00360 04 4333722 4338135 ECH