Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00355 ATGTCTGAAGAGGCTGGATCCATGTTGGTTGCTTATGATGATCCCTCGGACCAGCGGTCACTATCTTTGGATGATACAAGTAGCACAGAGGAGTCACCTGGCGAAACCAGGCTCTCCTTGGAAACGGCTAATGATGCCATTCCGTATATCGGCCAAAGGTTTGCTACTCATGATGCTGCTTATGAATACTATAGTGAGTTTGCAAAGAGGTGTGGATTTTCAATTCGACGTCACCGTACAGAGGGAAAAGATGGTGTTGGTAAAGGACTTACTAGGCGTTATTTTGTTTGTCATCGCGCCGGGAACACTCCTGTCAAGACATCAACAGAAAGTAAACCTCAACGAAATAGAAAGTCTTCTCGATGTGGATGCCAAGCTTACATGAGGATAAGCAAGACAACTGAATTTGGATCCCCAGAATGGCGGGTGACTGGTTTTGCCAACCACCATAATCATGAACTCTTAGAGCCAAACCAAGTTCGATTTCTTCCTGCATATAGAACTATTTCAGATGCTGACAAAAACCGAATCCTTATGTTTGCCAAAACAGGGATATCTGTTCACCAAATGATGAGGCTTATGGAACTTGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACGGAAAAGGATGTGCGTAATTTACTCCAGTCATTTAGAAAATTGGATCCTGAAGAGGAAAGCTTAGATTTATTGAGAATGTGCCGGACTATAAAGGAGAAAGATCCTAATTTTAAATTTGAGTTTACACTCGATACAAATAACCGTTTGGAAAATATTGCTTGGTCATATGCCTCATCAATCCAGTTGTATGATATTTTTGGTGATGCCGTGGTTTTTGACACAACACACCGCCTAACTGCATTTGACATGCCACTTGGTATATGGGTTGGAATGAATAATTATGGAATGCCTTGCTTTTTTGGCTGTGTGGTTCTACGAGATGAAACCATGAGATCATTTTCCTGGGCACTTAAGGCTTTCTTAGGGTTTATGAATGGAAAGGCTCCGCAGACGATATTAACTGACCAAAATATATGTCTCAAAGACGCAATATCTACAGAACTACCAACAACAAAACATGCCTTCTGCATATGGATGATAGTGGCAAAGTTTCCATCTTGGTTTAATGCTGTTCTTGGGGATCGCTACAATGAGTGGAAGGCTGAATTTTATAGACTCTATAATCTTGAATCCGTTGAGGATTTTGAATTAGGCTGGAGGGAAATGGTTTGTTCTTATGGACTGCATTCCAATCGGCACATGGTCAATTTATATAGCTCTCGCTCACTTTGGGCATTGCCATTTTTGAGAAGTCATTTTCTTGCAGGAATGACTACAACTGGTCAATCAAAGTCAATTAATGCGTTCATTCAACGGTTTCTCAGTGCACAAACCCGACTTGCACATTTTGTTGAACAGGTAGCTGTTGCCGTTGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATATCTGCCTCAAAACAGGAGCTCCCATGGAGTCACATGCCGCTACAATCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAGCAACTTGTGTTGGCTGCACACTATGCTTCTTTTCCAATTGAAGACGGTTTTCTTGTGAGGCACCACACAAAAGCTGAGGGAGGTCGGAAAGTTTATTGGTCTCCTCAGGAAGGAATTATAAGTTGCAGCTGCCATCAATTTGAATTCTCTGGAATTCTCTGTAGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAAATCCCAGATAGATATCTTCCCATCCGTTGGCGTCGAATCAGCATACCCTCCTCTAAACTTGCTCAGAGTGCACCAAATGATCATACTGAAAGGGTTCAGTTTTTACAAAATATAGTGTCGTCTCTGATTACAGAATCTGCAAAGTCTAAGGAACGGTTAGATATTGCTACAGAACAAGTTTCCATCCTTCTGTCTCGCATTAGAGAGCAACCAATTTCATTACATGGTGCCAGAGATTTCTCTTCCATCAATAGAAATCTTTGA 2040 0.4132 MSEEAGSMLVAYDDPSDQRSLSLDDTSSTEESPGETRLSLETANDAIPYIGQRFATHDAAYEYYSEFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGSPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRTIKEKDPNFKFEFTLDTNNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGMNNYGMPCFFGCVVLRDETMRSFSWALKAFLGFMNGKAPQTILTDQNICLKDAISTELPTTKHAFCIWMIVAKFPSWFNAVLGDRYNEWKAEFYRLYNLESVEDFELGWREMVCSYGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNICLKTGAPMESHAATILTPFAFSKLQEQLVLAAHYASFPIEDGFLVRHHTKAEGGRKVYWSPQEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDRYLPIRWRRISIPSSKLAQSAPNDHTERVQFLQNIVSSLITESAKSKERLDIATEQVSILLSRIREQPISLHGARDFSSINRNL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00355 679 MobiDBLite consensus disorder prediction 21 39 - -
Aip04g00355 679 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 18 671 IPR031052 GO:0006355
Aip04g00355 679 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 18 671 - -
Aip04g00355 679 SMART 26again6 564 591 IPR006564 GO:0008270
Aip04g00355 679 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Aip04g00355 679 MobiDBLite consensus disorder prediction 1 41 - -
Aip04g00355 679 Pfam FAR1 DNA-binding domain 62 155 IPR004330 -
Aip04g00355 679 Pfam MULE transposase domain 278 370 IPR018289 -
Aip04g00355 679 Pfam SWIM zinc finger 560 587 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00355 Aip-Chr4 4297438 4300064 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip04g00355 MULE 1.2e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00355 - - gmx:100810717 1317.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00355 04 4297438 4300064 Aip04g00355 04 4297438 4300064 ECH