Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00354 ATGGCTTGTTCAAATTGCCAATCCGTGTTGCCTAAACCAAATGATTGGGTGAAGGGTAAATTGGTCGGAACCGGATCTTTCGGTACAGTCAATTTGGCCATGAACAAATCCACCGGAGGGCTTTTTGTGGTGAAATCAGCACATATAGGGGGTGGTTGTGAGGCTTTGAGTAATGAGGTGAAAATCCTAGAGAGTTTAAGTTCATCACCATATATTGTTCAATATCTGGGGAAAGAGGAGGACCAAGGTAATCTCAATGTCTTCATGGAGTACATGGCTGGAGGTAGCTTGGCAGATGTGGCTCAAAAGTTTGGTGGATCATTGGATGAAGATGTTGTCCGGTTGTATACTAGAGAAATACTTCATGGTTTACAGCATCTTCACCAGCATGGAATTGTGCATTGTGATCTTAAGTGTAAGAATGTGCTTTTAGGTTCATCCGGGAACATCAAATTGGCAGACTTTGGATGTGCCAAAAGGGTGAAGGACTTGAAGGCCGCCGCGCGTTTAGGAGGGACTCCTCTATGGATGGCCCCTGAAGTATTGAGGAATGAGCAGTTGGATGTTTCTGCTGATATATGGTCTTTGGGATGTACAGTTATTGAAATGGCCACTGGAAGGTATCCTTGGGCCGGCGAAGTGTCGAATCCAATGGCTTCTGTGCTGAGGATCGCCAATGGTGACGAGATACCTCAACTTCCAGCTCATTTCTCCAAGGAGGGTTTGGATTTCTTGACCAAGTGCTTGGAGAGAGACCCCAAAAAGAGGTGTACTGCTCAGGACTTGCTTCACCATCCATTTCTGTCAAGGAGTTCAAGAAGATCTTCTCAACAAAAGCAGTGTGTATCTTCACCAACAAGTGTTTTGGAGGTTCATGGTTTTGAGGATGCTTGTGATTTAGATGATGAGTTAGAAAGCTCTCGGGGACATGATAAGCTCTCTATTAGAAACCCGTTCGCGTGCCATGATCGAGCAGTAGGAAGCAAAGTATGCCAACCAGAAGACAGTGCCCTATGGTCGTCTGGGAGTTGGATTACTGTTAGGTCAGGATAA 1053 0.4539 MACSNCQSVLPKPNDWVKGKLVGTGSFGTVNLAMNKSTGGLFVVKSAHIGGGCEALSNEVKILESLSSSPYIVQYLGKEEDQGNLNVFMEYMAGGSLADVAQKFGGSLDEDVVRLYTREILHGLQHLHQHGIVHCDLKCKNVLLGSSGNIKLADFGCAKRVKDLKAAARLGGTPLWMAPEVLRNEQLDVSADIWSLGCTVIEMATGRYPWAGEVSNPMASVLRIANGDEIPQLPAHFSKEGLDFLTKCLERDPKKRCTAQDLLHHPFLSRSSRRSSQQKQCVSSPTSVLEVHGFEDACDLDDELESSRGHDKLSIRNPFACHDRAVGSKVCQPEDSALWSSGSWITVRSG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00354 350 CDD STKc_MAPKKK 15 268 - -
Aip04g00354 350 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Aip04g00354 350 ProSiteProfiles Protein kinase domain profile. 16 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00354 350 SMART serkin_6 16 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00354 350 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 7 349 - -
Aip04g00354 350 SUPERFAMILY Protein kinase-like (PK-like) 14 305 IPR011009 -
Aip04g00354 350 Gene3D Phosphorylase Kinase; domain 1 9 97 - -
Aip04g00354 350 Pfam Protein kinase domain 18 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00354 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Aip04g00354 350 Gene3D Transferase(Phosphotransferase) domain 1 98 303 - -
Aip04g00354 350 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 7 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00354 Aip-Chr4 4295473 4296525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00354 8 348 MAP Kinase Kinase Kinase AT5G55090 41.551 4.79e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aip04g00354 Pkinase 1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00354 K20716 - gmx:100798237 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00354 04 4295473 4296525 Aip04g00354 04 4295473 4296525 ECH