Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00353 ATGGCTTCCTCTCTCTTATTCTCCGCATCTTCTTCTCACTCCTTCTTCCACTTCCATCCACTTCCACATTCTTCTGCTACTCTCTCTTCATCTTTCTCTCTTTCCACCTCTCACTCTTCACTCTTCAAACCCAGGGTGAGTTTACAGCTGGGAAAGTTGCCTAGTTTTCTTTTGGTGCAAAATGGTGTCATACCAAGGGCGTATTATGTACTTGAAGGCTTGGATCCTGTTAAGAAAAGACCTGAAATGTATATTGGAAGCACTGGCCCGCGTGGGTTGCACCATTTGGTTTATGAAATTTTGGATAATGCTGTTGACGAAGCTCAAGCTGAATTTGCTTCCAAGATTGATGTTGTTTTACAATCGGATGGTTCTGTAAGCATAACTGACAATGGTCGTGGGCTTCACTCGACTGTACGATCCAACATTTTCAGTTATATGGGTTGCATATGCTTCAAAGGGAAATCTGCAGAGGAATACATTGCAGAGAACGGCATAAGAAGGGGCAAGTCCAAGGCGTTGAAATCAAAGCGTGCGACTAATTCTCTTCCCCTCATAGACGTTGGGAATGATGCCGTCCAAGGGGAGGTGGCTGTGGCACCCACGGTGTTCAGTGTGACCAACGGGGAGCGAGGAGCTCTGGTTATCGCTGGATGGCCCTCTTGGCTCGCTGCCGTTGCTGGGGAAGCCATTAATGGTTGGATTCCTCGCAGAGCTGACTCCTTTGAGAAGTTCGATAAGATTGGTCAAGGAACTTATAGTAGTGTTTATAGAGCTCGTGATCTTGAAACAAATAAAATTGTTGCATTAAAGAAGGTTCGATTTGCTACTATGGATCCAGAAAGTGTCCGCTTTATGGCAAGGGAAATTCTTTTGCTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTAGAAGGCATGATTACTTCCAGGGTTTCTGGTAGCTTGTACCTTATTTTTGACTATATGGAACATGATCTTGCAGGGCTTGCAACAATACCTGGCATCAAGTTTTCTGAAGCACAGATCAAATGTTATATGCAACAACTACTTCGTGGTCTTGAGCATTGCCACGGTCGAGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTAGTTGATAATAATGGCCGCTTGAAGATTGGTGATTTTGGACTTGCAACTTCGTTTCATCCATCTAAGGGGAAGCCTTTAACAAGTCGTGTTGTAACCTTGTGGTACCGACCGCCTGAACTTTTACTCGGAGCTACAGATTATGGAGTTTCCGTGGACTTATGGAGTTCTGGTTGTATTCTTGCTGAATTGTTTTCTGGAAAGGCTATAATGACTGGACGAACAGAGGTGGAGCAACTTCATAAAATTTTCAAACTTTGTGGGTCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTGCGAAATGCAACAATTTTCAAACCTCAACAACCATACAAACGGGTTGTTTCTGAGACATTCAAGAATTTTCCTTCATCTGCACTGAGCCTATTGGAGGTACTTCTTGCTACAGAACCTGAAGATCGAGGAACAGCATCTTTAGCACTTCAAAATGAGTTCTTTACCACAGAGCCACTTCCATGTGATCCATCAACTTTGCCAAATTATCCACCGAGTAAGGAGTTTGATGTTAAACTTCAACAAGAGGAAGCTAGAAGGAGAGAGAGATCAACAAATAAAGAGCGTGAACAAGGATCAGTTAGGAGGAAGTTAAAAGAGTCTAAAAATGTTCTAGCTCCTGATGCTAATGCTGAATTGCAAGCATCAATAGAGAAGCGACAAAGGCAACCTAATTCAAAATCCATTGTTGAAAGCTACAATCCTAAAGAGGATGGCAACGCTGGCTTCCCTCTTGGACTTGCAAAGCCAAGAGTTCTCAGTGTCTTCTCTCATTCCGGCCAGTCAATGCATTCAAGTGCATATGGTTCCTCAAACAATATGAATTTGAAAGAGGAAAATGTTCTTATTGGCTTCAATCATGACTTTGGATCAAGGCACACTGAATTGAGTAAACAAAAATTTCGTTGGCTTGATGGCACACAATTGTCCAAATTTTCTGGTTCATTTGCAGTTCGAGGTGATGGCAATTCGAATGATTTGCTGGATGGACTGAAATTGCACCAAAAGGACTTCAATCCTTTTGAAAAGGATCTTACCATGGGTTATGCTTCCAAAAACAAATGCTTCCACTATTCTGGACCATTGTTGTCACAGGGGGGGAACATTGAAGACATGCTCAAGGAGCACGACAGACAAATCCAACAGGCTGGCCGCAAAGGTCGTTTGGAAAAGGACAACACAAAAAAGGCTAAGAAGGAGAATGGCCTAACCGAATCACTACTATAG 2361 0.4303 MASSLLFSASSSHSFFHFHPLPHSSATLSSSFSLSTSHSSLFKPRVSLQLGKLPSFLLVQNGVIPRAYYVLEGLDPVKKRPEMYIGSTGPRGLHHLVYEILDNAVDEAQAEFASKIDVVLQSDGSVSITDNGRGLHSTVRSNIFSYMGCICFKGKSAEEYIAENGIRRGKSKALKSKRATNSLPLIDVGNDAVQGEVAVAPTVFSVTNGERGALVIAGWPSWLAAVAGEAINGWIPRRADSFEKFDKIGQGTYSSVYRARDLETNKIVALKKVRFATMDPESVRFMAREILLLRRLDHPNVMKLEGMITSRVSGSLYLIFDYMEHDLAGLATIPGIKFSEAQIKCYMQQLLRGLEHCHGRGVMHRDIKGSNLLVDNNGRLKIGDFGLATSFHPSKGKPLTSRVVTLWYRPPELLLGATDYGVSVDLWSSGCILAELFSGKAIMTGRTEVEQLHKIFKLCGSPSEEYWKKSKLRNATIFKPQQPYKRVVSETFKNFPSSALSLLEVLLATEPEDRGTASLALQNEFFTTEPLPCDPSTLPNYPPSKEFDVKLQQEEARRRERSTNKEREQGSVRRKLKESKNVLAPDANAELQASIEKRQRQPNSKSIVESYNPKEDGNAGFPLGLAKPRVLSVFSHSGQSMHSSAYGSSNNMNLKEENVLIGFNHDFGSRHTELSKQKFRWLDGTQLSKFSGSFAVRGDGNSNDLLDGLKLHQKDFNPFEKDLTMGYASKNKCFHYSGPLLSQGGNIEDMLKEHDRQIQQAGRKGRLEKDNTKKAKKENGLTESLL 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00353 786 MobiDBLite consensus disorder prediction 530 588 - -
Aip04g00353 786 MobiDBLite consensus disorder prediction 756 780 - -
Aip04g00353 786 ProSiteProfiles Protein kinase domain profile. 242 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00353 786 CDD STKc_CDK9_like 242 526 - -
Aip04g00353 786 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Aip04g00353 786 Pfam Protein kinase domain 242 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00353 786 PRINTS DNA topoisomerase II family signature 92 107 - -
Aip04g00353 786 PRINTS DNA topoisomerase II family signature 127 140 - -
Aip04g00353 786 ProSitePatterns Protein kinases ATP-binding region signature. 248 271 IPR017441 GO:0005524
Aip04g00353 786 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 90 145 IPR003594 -
Aip04g00353 786 PANTHER CELL DIVISION PROTEIN KINASE 191 705 - -
Aip04g00353 786 Gene3D Phosphorylase Kinase; domain 1 237 329 - -
Aip04g00353 786 Gene3D - 66 169 IPR036890 -
Aip04g00353 786 MobiDBLite consensus disorder prediction 594 611 - -
Aip04g00353 786 MobiDBLite consensus disorder prediction 548 581 - -
Aip04g00353 786 Gene3D Transferase(Phosphotransferase) domain 1 330 566 - -
Aip04g00353 786 PANTHER KINASE CDK9, PUTATIVE-RELATED 191 705 - -
Aip04g00353 786 SUPERFAMILY Protein kinase-like (PK-like) 235 534 IPR011009 -
Aip04g00353 786 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 65 146 IPR036890 -
Aip04g00353 786 SMART serkin_6 242 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00353 786 MobiDBLite consensus disorder prediction 594 613 - -
Aip04g00353 786 MobiDBLite consensus disorder prediction 756 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00353 Aip-Chr4 4281253 4292298 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00353 234 569 Core Cell Cycle Gene Families AT5G10270 49.153 5.66e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aip04g00353 Pkinase 3.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00353 - - aip:107638508 1280.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00353 04 4281253 4292298 Aip04g00353 04 4281253 4292298 ECH