Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00349 ATGCAAATTCTTATTTGGAATGGACTCCAATGCTTCGTTCCTTCTATCCTAGAGTCCAAATTGGTAGACAACTTTAACCTCGCATCCAAGCTATCAGTACAACCAATAATATCGCCGTCGTTGTTTATATGGAAATTGAAACGATTACTAAACGTTGATTCGGAGAAGAAGCTGAAGAAAATGATCGGAGTGGTGGACAATATGGCTATAGAGATGATGGAGAAGAGGAAGAGGAAGAGGGAGATGGTGACAACGATGACGGGTCTTAATAAATCAAACTTACTGTCTAGATTCATGGGATCTATCAAAGATGACAAAAAGAAAATCTCACCTTTGGTAACTCGGAAGGAAACCATTCGTGTGAGATGGAATCGGGCACCATCAAATTGGATCACGCTGAACACAGACGGCGCTATAGAGGGCACGACGATGAAGGTTAGTTGCGGAGGACTCTTCAGGGGCAACGATGGGAAGTGGATTGGCGGCTTCTCCTTTCCCATCGGTCGTTGCTCAGCTTACAAGGCTGAGTTGTGGGGCATTCTGAAAGGACTAGAGCGGGCTTGGGCTTTGGAAATAAGGAAATTAGTTATACAGTGTGACTCCCAAGCTACTATATCCATGATTAATGGTCAAAAAGATCTTAGCAAACACCCTAATGCCTTTATCAAAAATATTAACCAGTGA 684 0.4298 MQILIWNGLQCFVPSILESKLVDNFNLASKLSVQPIISPSLFIWKLKRLLNVDSEKKLKKMIGVVDNMAIEMMEKRKRKREMVTTMTGLNKSNLLSRFMGSIKDDKKKISPLVTRKETIRVRWNRAPSNWITLNTDGAIEGTTMKVSCGGLFRGNDGKWIGGFSFPIGRCSAYKAELWGILKGLERAWALEIRKLVIQCDSQATISMINGQKDLSKHPNAFIKNINQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00349 227 Gene3D - 129 227 IPR036397 GO:0003676
Aip04g00349 227 ProSiteProfiles RNase H type-1 domain profile. 127 227 IPR002156 GO:0003676|GO:0004523
Aip04g00349 227 PANTHER OS05G0353850 PROTEIN 108 226 - -
Aip04g00349 227 CDD RNase_H_like 133 222 IPR044730 -
Aip04g00349 227 SUPERFAMILY Ribonuclease H-like 129 210 IPR012337 -
Aip04g00349 227 Pfam Reverse transcriptase-like 134 226 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00349 Aip-Chr4 4256062 4259467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00349 19 108 Cytochrome P450 AT2G27690 35.165 3.85e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00349 - K20624 adu:107478656 142.895