Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00347 ATGGCGTCGGCTAGCCTTGGAAATGGTGGTGTTGGCAGTTCCAGGTCTGTTAATGGCTTCAGGGGTTCTTCTAGTTCAGTTGATTGGCTCGGGAGAGAGATGCTTGAGATGAGATTGAGGGACAAAGCTGACCATGAAGAAGACAGAGATAGTGAGCCGGACATCATTGATGGTGTGGGTGCTGAAACTGGACATGTGATTAGAACCAGCATCGGTGGCCGAAATGGTCAATCTAGGCAGAATATTAGCTATATTGCGGAACACGTTGTCGGCACAGGCTCTTTTGGTGTTGTTTTTCAAGCAAAATGTAGAGAAACCGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGATAAGCGCTACAAGAATAGAGAACTACAGATAATGCAGATGCTGGACCATCCAAATATTGTGGCCCTTAGGCATTGTTTCTATTCAACGACTGACAAAGAAGAAGTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACTGTGAATCGTATTGCAAGGAACTATAGCCGAATGAATCAGCGAATGCCTTTAGTATATGTAAAGCTTTATACCTATCAGATTTGCAGGGCCCTTGCTTATATACATAATTGCATTGGTATATGTCACCGTGACATCAAACCTCAGAACTTACTTGTGAACCCACACACTCATCAGCTGAAACTATGTGATTTTGGAAGTGCTAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCTTACATCTGTTCAAGATACTATCGTGCTCCAGAACTTATCTTTGGTGCCACTGAATATACAACCGCAATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCTTTGTTTCCTGGAGAGAGTGGAGTCGATCAACTTGTTGAAATCATCAAGGTTTTGGGAACTCCAACAAGGGAGGAGATAAAATGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGGTCTTTCAAAAACGTTTACCCCCAGAAGCAGTAGACCTTGTCTGTAGATTTTTTCAGTACTCTCCCAATCTGCGATGCACTGCTTTGGAAGCTTGCATTCATCCCTTCTTCGATGAGTTGAGGGACCCTAACACCCGGCTTCCTAATGGTCGCCCACTTCCACCTCTGTTTAATTTTAAGCCTCAGGAACTTTCAGGGATACCACCTGACGTCATCAGTCGGCTTATTCCAGAGCATGCTCGTAAGCAGAACTTGTTCATGGCATTGCACAACTAG 1269 0.431 MASASLGNGGVGSSRSVNGFRGSSSSVDWLGREMLEMRLRDKADHEEDRDSEPDIIDGVGAETGHVIRTSIGGRNGQSRQNISYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFYSTTDKEEVYLNLVLEYVPETVNRIARNYSRMNQRMPLVYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPDVISRLIPEHARKQNLFMALHN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00347 422 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 419 - -
Aip04g00347 422 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 419 - -
Aip04g00347 422 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
Aip04g00347 422 SMART serkin_6 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00347 422 ProSitePatterns Protein kinases ATP-binding region signature. 90 114 IPR017441 GO:0005524
Aip04g00347 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Aip04g00347 422 ProSiteProfiles Protein kinase domain profile. 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00347 422 CDD STKc_GSK3 79 371 IPR039192 -
Aip04g00347 422 Pfam Protein kinase domain 86 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00347 422 Gene3D Transferase(Phosphotransferase) domain 1 164 412 - -
Aip04g00347 422 SUPERFAMILY Protein kinase-like (PK-like) 83 396 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00347 Aip-Chr4 4239199 4244945 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00347 90 376 Core Cell Cycle Gene Families AT1G76540 34.915 1.04e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Aip04g00347 Pkinase 2.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00347 K03083 - jre:108983720 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00347 04 4239199 4244945 Aip04g00347 04 4239199 4244945 ECH