Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00319 ATGGCTGTGCATTCGGAATATCGTCTTATTGCTTACTCAGAAGAGATTGTAGATGGGCAGCCTATTTTTGTTTCTTCAAACTGTCTTCCTATCAAGGCTGTGAAATATGAACCAGCTGGCCATGCCTTCCATTCTGCCGCACTCAAACTTCTCGGTGTTAGGGAGAGTAACGAAGATCCTGATTCTAAAAAGGTTGTTGACGATAAGGAACCGACATCTCTCCCGTCCGATTCCTACAGCAGCAAGAGCAAAAAGAAAGCTGGAGACAAGCAGCAAGATCACTATGCATTGTTGGGCCTGAGTCATCTAAGATATCTTGCCTCGGAGGATCAAATTCGTAAGAGCTACCGCGAAACTGCCTTGAGGTTTCATCCCGACAAACAGGCTGCTCTGCTTCTTGCTGAGGAAACCGAAACCGCGAAGCAGGCAAAGAAAGATGAAATAGAAAGCCACTTTAAGGCCATCCAGGAGGCGTATGAGGACTTCTTCAAAGTGTTTGGTCCTGCATTTATGAGGAATGGTCGGTGGTCAGTCAGTCAACCAATTCCATCACTAGGCGATGATAATACTCCACTAAAAGAAGTTGATGATTTCTACAATTTTTGGTACTCCTTTAAAAGTTGGAGGGAGTTTCCCCATGCTGATGAGTTTGATCTTGAGCAAGCTGAATCTCGTGACCATAAGAGATGGATGGAAAGGCAGAATGCAAAACTTTCAGAGAAAGCTAGGAAGGAAGAGTATGCTCGGATACGTTCCCTTGTTGATAATGCTTATAAGAGAGACCCAAGAATATTGAGAAGAAAAGAAGAGGAGAAAGCTGAGAAGCAAAGGAAAAAAGAGGCTAAAATCATGGCAAAGAGGATGCAGGAAGAAGAAGCAGCCAGGATTGCAGAAGAGGAGAAGCGGCGAAAGGAGGAGGAAGAGAAACGAGCTGCAGAAGTTGCTTCACAGCAGAAGAAGGTGAAGGAGAAAGAGAAAAAGCTCTTGCGGAAGGAGAGAACACGGCTGCGGAATCTCTCTGGACCTATATTGTCACAACAGTTACTTGGTATTTCTGACGACGATGTTGAGAAGCTTTGCATGTCATTTGATATTGAGAAGCTAAGGGGTTTGTGTGAGAAAATGGAGGGAAAGCAGGTAGTGGACCAGGCAGAAGTCCTAAGAGATGCACTGAGTTGCAAGAAAGACGAGACTGATAAGAAAGAAGAGAGAAGTATCCAACAAAATGGTGCCGTGAAGGTTAATGGCAGTGTTTCTTTAAGCAACATTGAGAAGAAGGAGAAACCTTGGAGTAAAGAAGAGATTGATCTATTGAGGAAAGGAATGCAGAAATATCCCAAAGGAACTTCAAGGAGATGGGAGGTTATTTCCGAATACATTGGTACTGGAAGATCAGTGGACGAAATAATGAAGGCAACAAAAACAGTTCTCCTCCAGAAGCCAGATTCAGCCAAAGCTTTTGATGCTTTCCTTGAGAAAAGGAAACCTGCAGCACAATCAATTGCATCTCCACTGTCAACCAGAGAAGAATTAGAAGGGGTATCAATTCCTGCAAAGCCTGAAAATAGTGCTGCTGCAACAACAAATAACTCAGAAGACTCTAATAGCAACCAGACATCTGGTTCTGCTCCTTCTCCTGCTGCTGCAAATGGAGTTTCCTCTAGTTCAGAACAAGACGTGTGGTCTGCAGTACAGGAACGAGCACTGGTTCAAGCTCTAAAAGCCTTCCCAAAGGAAACTAACCAGCGATGGGAACGAGTCGCAACAGCTGTCCCTGGAAAGACTGTGAATCAGTGCAAGAAAAAATTCGCATTGATGAAGGAGAGTTTCAGGAGCAAGAAAAGTGCGGTTTAA 1854 0.4412 MAVHSEYRLIAYSEEIVDGQPIFVSSNCLPIKAVKYEPAGHAFHSAALKLLGVRESNEDPDSKKVVDDKEPTSLPSDSYSSKSKKKAGDKQQDHYALLGLSHLRYLASEDQIRKSYRETALRFHPDKQAALLLAEETETAKQAKKDEIESHFKAIQEAYEDFFKVFGPAFMRNGRWSVSQPIPSLGDDNTPLKEVDDFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRSLVDNAYKRDPRILRRKEEEKAEKQRKKEAKIMAKRMQEEEAARIAEEEKRRKEEEEKRAAEVASQQKKVKEKEKKLLRKERTRLRNLSGPILSQQLLGISDDDVEKLCMSFDIEKLRGLCEKMEGKQVVDQAEVLRDALSCKKDETDKKEERSIQQNGAVKVNGSVSLSNIEKKEKPWSKEEIDLLRKGMQKYPKGTSRRWEVISEYIGTGRSVDEIMKATKTVLLQKPDSAKAFDAFLEKRKPAAQSIASPLSTREELEGVSIPAKPENSAAATTNNSEDSNSNQTSGSAPSPAAANGVSSSSEQDVWSAVQERALVQALKAFPKETNQRWERVATAVPGKTVNQCKKKFALMKESFRSKKSAV 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00319 617 CDD SANT 561 607 IPR001005 -
Aip04g00319 617 MobiDBLite consensus disorder prediction 56 90 - -
Aip04g00319 617 SMART sant 557 609 IPR001005 -
Aip04g00319 617 SMART sant 426 479 IPR001005 -
Aip04g00319 617 Gene3D - 422 480 - -
Aip04g00319 617 Pfam Myb-like DNA-binding domain 560 603 IPR001005 -
Aip04g00319 617 Gene3D DnaJ domain 90 162 IPR036869 -
Aip04g00319 617 CDD DnaJ 93 160 IPR001623 -
Aip04g00319 617 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 160 - -
Aip04g00319 617 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 160 615 - -
Aip04g00319 617 MobiDBLite consensus disorder prediction 495 560 - -
Aip04g00319 617 ProSiteProfiles Myb-like domain profile. 553 603 IPR001005 -
Aip04g00319 617 CDD SANT 429 471 IPR001005 -
Aip04g00319 617 SUPERFAMILY Homeodomain-like 559 613 IPR009057 -
Aip04g00319 617 Coils Coil 265 339 - -
Aip04g00319 617 Gene3D - 551 617 - -
Aip04g00319 617 SMART dnaj_3 92 190 IPR001623 -
Aip04g00319 617 ProSiteProfiles Myb-like domain profile. 422 477 IPR001005 -
Aip04g00319 617 SUPERFAMILY Chaperone J-domain 52 162 IPR036869 -
Aip04g00319 617 MobiDBLite consensus disorder prediction 56 71 - -
Aip04g00319 617 Pfam DnaJ domain 93 160 IPR001623 -
Aip04g00319 617 MobiDBLite consensus disorder prediction 521 560 - -
Aip04g00319 617 MobiDBLite consensus disorder prediction 291 326 - -
Aip04g00319 617 SUPERFAMILY Homeodomain-like 422 471 IPR009057 -
Aip04g00319 617 ProSiteProfiles SANT domain profile. 556 611 IPR017884 -
Aip04g00319 617 ProSiteProfiles dnaJ domain profile. 93 174 IPR001623 -
Aip04g00319 617 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 160 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Aip04g00319 617 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 160 615 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00319 Aip-Chr4 4054759 4056696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00319 80 265 C2H2 Transcription Factor Family AT1G74250 23.361 3.14e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip04g00319 DnaJ 1.3e-10 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00319 K09522 - gmx:100814414 887.1