Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00318 ATGGAGAATCGATTCAGAATTATTAGAGAATCTGATCTCTTAATGATGGATAATGCAGCTTCAGAACCAGTTTTCTTACATGGCGACTTGGATCTCTGGATTCTTGAGGCAAAAGCTCTCCCGAATTTGGATCTTTCCACGGAGACTATGCGAAAATGCATTACCATGGGCAACAGCTGTTCCCCTCCCTTTGTGAAAGGGCTCAAGACACATTCAGGGAGACACAAAATGATTACCAGCGACCCCTATGTGTCCGTGTGCCTCTCGGGGGCTACCATTGCTCAAACTAGGATCATTCCTAACTGTGAAAACCCTTTGTGGGACGAGCATTTCTTAATTCCGGTTGCTCACCCTGCTCAGAAATTGGAGTTCCATGTCAAAGACAATGATGTTCTTGGTGCTGAGCTCATTGGAGTAGTGGATATATCTGCTAACAAGATTTTGTCCGGAGGCATCATCGACGATTGGTTTCCAATCGTTGGCCAGAATGGAAACTGCTTGAAACCCTATCCTGAGCTGCATCTGTCTATCCAATTTAGGCCAGTTGGGGCAGAAGAGACAGGTTCTCTTGGGGTTCCTGATACCTATTTTCCTCTCCGAAAAGGAGGGTCTGTCACCCTTTATCAAGATGCACATGTTCCGGATGGTAAGCTGCCTGAGATTCCACTTGAGGATGGGAAGGTCTTTCAGCATGGCAAGTGTTGGGAAGAGATTTGCCAAGCCATTTTGGAAGCTCACAACCTCATATATATTATAGGGTGGTCGGTTTACCACCCAGTGAAGCTTATCAGGGAGCCATCAAAGCCCCTGCCTTCTCAGGCAGAGCTTTCACTTGGAGAGTTACTGAAATACAAGTCGCAAGAAGGGGTCCGCGTGGTCATGCTCATTTGGGATGACAAAACCTCTCATGACAAATTTCTTTTGAAAACTGATGGTGTCATGCAAACTCACGATGAACAAACTAGGAAGTATTTTAAGAACTCCACTGTGCATTGTGTGCTAGCTCCACGTTATGCAAGCAGTAAGCTCAGTGTTTTCAAGCAACAGGTTGTGGGAACCCTTTTTTCTCACCATCAGAAGTGTGTGCTGGTAGACACTCAAGCTTCTGGGAATAATCGGAAAATAACTGCTTTTATTGGTGGCTTGGATCTCTGTGATGGGAGATATGATACTCCTGAGCATCGGCTTTTCGATGATCTAGATACTGTCTTTCACAATGATTTTCGTAATCCTACATTCCCGTCGAATTCGCGTGGGCCAAGGTTGCCATGGCACGACTTGCATTGCAAAGTCGAGGGTCCAGCTGCATATGATATATTGATCAATTTTGAACAAAGATGGAGAAAAGCAAAAAAATGGCGTGATTTTCGGCTAAAAAAGGTGACAAAGTGGCATGAGGATGCTTTACTAAGCCTAGAACGCCTTTCATGGATGCTCACTCCATCTTCGAGTCCTGATGGTGAGAAAGCTGTCTATGTAACCGATGAACATGATCCTGAGAGTTGGAATGTGCAGGTATTTCGGTCCATAGATTCAGGATCCGTCATGGGTTTTCCAAAGAGTGTTGAGCAAGCAAAGGCTCAGAACCTTTTCTGTGGAAAAAATTTGAAAGTAGATAAAAGCATTCATGTTGCTTATGTAAAAGCAATAAGATCAGCAGAACACTTCATCTACATTGAGAATCAGTATTTCCTGGGGTCCTCGTATAATTGGCATTCACACAAAGGTGCAGGTGCAAATCACTTGATTCCCATGGAATTGGCCTTAAAAATTGCCAGCAAGATCATCGCCAACGAACGTTTTTCTGCGTATATAGTTATACCAATGTGGCCAGAGGGAGTTCCTGGTAGTGTTGCTATTCAAGAAATTCTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAAGATTGTTGCTGATGCTCTTAAAAAAGCAGGTCTTTCTCATCACTATCATCCTCAAGATTACCTCAATTTTTACTGTCTTGGAAAGCGTGAACCTTTGTCTTCAGATATTCCATTGCCAACTCAGACATCCGAAAATCGTGGTTTGAATTCATCCAAAAAATCAAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGACGAGTATGTTATCATGGGATCTGCAAATATTAACCAGAGATCCATGGATGGTTCAAGGGACACAGAAATAGCTATGGGAGCTTATCAGCCAAAATACACATGGAAAGAGAAGAATTCTCATCCACATGGCCAGGTGTATGGTTACAGAATGTCACTGTGGGCTGAGCACCTTGGTAGCATTAAGGAAATATATGAAGAACCAAAGAGCCTAGAATGTGTTAGGTATGTGAACTATATAGCCAAACAAAACTGGGATGCATATGTATCAGAGGAAGGGAAGGAGCTGAGGGGACATTTGATGCAGTACCCGATTATGGTAGGCTCTGATGGAAAAGTGAGCCCGCTGCCAGATCATGAGTACTTTCCTGATGTTGGTGGTAAAGTTCTTGGATCACCCAATTCGCTTCCTGATGCACTAACCACATGA 2544 0.4347 MENRFRIIRESDLLMMDNAASEPVFLHGDLDLWILEAKALPNLDLSTETMRKCITMGNSCSPPFVKGLKTHSGRHKMITSDPYVSVCLSGATIAQTRIIPNCENPLWDEHFLIPVAHPAQKLEFHVKDNDVLGAELIGVVDISANKILSGGIIDDWFPIVGQNGNCLKPYPELHLSIQFRPVGAEETGSLGVPDTYFPLRKGGSVTLYQDAHVPDGKLPEIPLEDGKVFQHGKCWEEICQAILEAHNLIYIIGWSVYHPVKLIREPSKPLPSQAELSLGELLKYKSQEGVRVVMLIWDDKTSHDKFLLKTDGVMQTHDEQTRKYFKNSTVHCVLAPRYASSKLSVFKQQVVGTLFSHHQKCVLVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFDDLDTVFHNDFRNPTFPSNSRGPRLPWHDLHCKVEGPAAYDILINFEQRWRKAKKWRDFRLKKVTKWHEDALLSLERLSWMLTPSSSPDGEKAVYVTDEHDPESWNVQVFRSIDSGSVMGFPKSVEQAKAQNLFCGKNLKVDKSIHVAYVKAIRSAEHFIYIENQYFLGSSYNWHSHKGAGANHLIPMELALKIASKIIANERFSAYIVIPMWPEGVPGSVAIQEILFWQGQTMSMMYKIVADALKKAGLSHHYHPQDYLNFYCLGKREPLSSDIPLPTQTSENRGLNSSKKSRRFMIYVHAKGMIVDDEYVIMGSANINQRSMDGSRDTEIAMGAYQPKYTWKEKNSHPHGQVYGYRMSLWAEHLGSIKEIYEEPKSLECVRYVNYIAKQNWDAYVSEEGKELRGHLMQYPIMVGSDGKVSPLPDHEYFPDVGGKVLGSPNSLPDALTT 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00318 847 PANTHER PHOSPHOLIPASE D 21 847 IPR015679 -
Aip04g00318 847 CDD C2_plant_PLD 23 180 - -
Aip04g00318 847 Pfam PLD-like domain 695 729 IPR025202 -
Aip04g00318 847 SUPERFAMILY Phospholipase D/nuclease 520 775 - -
Aip04g00318 847 PANTHER PHOSPHOLIPASE D 21 847 - -
Aip04g00318 847 Pfam Phospholipase D Active site motif 354 388 IPR001736 GO:0003824
Aip04g00318 847 ProSiteProfiles C2 domain profile. 10 157 IPR000008 -
Aip04g00318 847 Gene3D Endonuclease Chain A 491 746 - -
Aip04g00318 847 Pfam C2 domain 28 159 IPR000008 -
Aip04g00318 847 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 182 IPR035892 -
Aip04g00318 847 SUPERFAMILY Phospholipase D/nuclease 193 457 - -
Aip04g00318 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824
Aip04g00318 847 PIRSF PLD_plant 15 847 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Aip04g00318 847 Gene3D C2 domain 27 188 IPR035892 -
Aip04g00318 847 SMART C2_3c 29 156 IPR000008 -
Aip04g00318 847 Pfam Phospholipase D C terminal 768 837 IPR024632 -
Aip04g00318 847 Gene3D Endonuclease Chain A 227 471 - -
Aip04g00318 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 353 388 IPR001736 GO:0003824
Aip04g00318 847 SMART pld_4 353 388 IPR001736 GO:0003824
Aip04g00318 847 SMART pld_4 693 720 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00318 Aip-Chr4 4048101 4052786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00318 24 846 Phospholipase D Gene Family (Wang group) AT2G42010 53.542 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00318 K01115 - gmx:100779740 1405.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00318 04 4048101 4052786 Aip04g00318 04 4048101 4052786 ECH