Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00313 ATGGAAAAGTACGAGCTGGTGAAGGATATAGGATCTGGGAATTTCGGGGTGGCAAGGCTTATGCGCCACAAAGAGACCAAGGAGCTTGTTGCTATGAAATACATTGAAAGGGGTCACAAGATTGATGAAAATGTTGCAAGGGAAATCATAAACCACAGAAGCCTTCGCCACCCGAATATCATTCGGTTCAAGGAGGTGGTTTTGACTCCTACACATCTTGGAATAGTGATGGAGTATGCAGCTGGAGGAGAGCTCTTCGAGCGAATTTGCAATGCTGGAAGATTTAGTGAAGATGAGGCTCGGTATTTCTTCCAGCAGCTCATCTCTGGAGTTAGCTACTGCCATTCCATGCAAATTTGCCATCGAGACTTGAAGCTGGAGAATACCTTACTGGATGGCAGCCCTGCCCCTCGTCTGAAGATTTGTGACTTTGGTTATTCCAAGTCATCTCTGCTTCATTCAAGGCCTAAATCAACAGTGGGAACTCCTGCCTACATTGCACCAGAGGTTCTTCAACGAAGAGAGTATGATGGAAAGTTGGCAGATGTATGGTCATGTGGAGTGACTCTTTATGTAATGCTAGTTGGAGCATACCCATTTGAGGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATAAATCGAATTATGGCTGTCCAATATATGATCCCAGACTATGTTCACGTATCTCAAGACTGTAGGCATCTTCTATCTCGCATTTTTGTGGCTAATCCAGCTAGGAGAATCACCATTAAGGAGATCAAGTCACACCCATGGTTCTTAAAGAACTTGCCTAGGGAATTGACAGAAATGGCTCAAGCTGTCTACTATAGAAAAGAGAACCCGACCTTTTCTCTTCAGAGTATAGAGGACATCATGAAAATTGTCGAGGAGGCCAAAACTCCTCCGCCAGCTTCCAGGTCAGTTGGAGGATTTGGATGGGGGGGAGAAGAGGAGGAAGATGAAGCAAAAGAAGAAGAAGAAGCCGAGGTAGAAGAAGACGAATATGAAAAAAGGGTCAAGGAGGCACAAGCTAGTGGAGAGTTTCATGTTAGTTAA 1059 0.4457 MEKYELVKDIGSGNFGVARLMRHKETKELVAMKYIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLQRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINRIMAVQYMIPDYVHVSQDCRHLLSRIFVANPARRITIKEIKSHPWFLKNLPRELTEMAQAVYYRKENPTFSLQSIEDIMKIVEEAKTPPPASRSVGGFGWGGEEEEDEAKEEEEAEVEEDEYEKRVKEAQASGEFHVS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00313 352 Coils Coil 317 346 - -
Aip04g00313 352 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00313 352 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00313 352 MobiDBLite consensus disorder prediction 315 333 - -
Aip04g00313 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Aip04g00313 352 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Aip04g00313 352 SUPERFAMILY Protein kinase-like (PK-like) 2 294 IPR011009 -
Aip04g00313 352 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2A-RELATED 2 346 - -
Aip04g00313 352 PANTHER SERINE/THREONINE KINASE 2 346 - -
Aip04g00313 352 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Aip04g00313 352 MobiDBLite consensus disorder prediction 300 352 - -
Aip04g00313 352 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00313 352 CDD STKc_SnRK2 3 259 - -
Aip04g00313 352 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00313 Aip-Chr4 4017752 4021308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00313 3 263 CBL-interacting serine-threonine protein kinases AT2G26980 42.647 1.76e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Aip04g00313 Pkinase 4.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00313 K14498 - gmx:100812259 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00313 04 4017752 4021308 Aip04g00313 04 4017752 4021308 ECH