Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00311 ATGGACGCTCAACAAACTACCAACAGAATGTGTTCTATAACTCAAATGAAGCAATTCCAATCAAATTCTGCGGGTGGTCTTCATTGTCAAGGTAAAAGGCCAAGTGTCAATTGGTCGCAACATGAAGAAGCACATCAAAACTTTTCCTGCCAGCTCAAGTTCTTGAGCTCCAATTTCCTATTCTCTTTGCCAACACAGAAGCCTCAAAATGGAGAACCAACGGATGGGAGGTTTGTAATCAATCAGAATCCAAATATTCAGACTTCACAGAGGGCACAAGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTCCAGAATTCTAGCAGGAGCTATCCCCAACCTGGAAAAACTGTTCAAGTTACTCCTCGGCACCATGAAGACAGGCGAATGAACCCCTTACAAAGGACCCATGAGAACGATAAGCTTAAGCCTCCTGATGTTACCACAACTCCAATTGTTACTAATCATAATTCACAAGTTTTGGACAGTTCAGTGAACAAGCATATCAAGCATGCTGGCCAAATCAACGAGTCATCAACAGGCATGGTTGTTGACATTGATGATGATGACATACTTGAGACCATTGATATTGATCAAATAGTGGAGAATTATCAGTCTTCTTCCACACCCAAACCTCCAATTTCCAAATTCCCTCCTATTACACCAACTGCAGATACAAATAATTTTGCTAGAGACGGGGGTAACTGTTTGCCACCAGAACTGTGTATAGATTGCAATCATGGTTACAAGTTAGGGCTTTGTCCTGAAGCAACAAGTCATTTGCAGGAATTTAAGGATAATCTGATTGCTATTTCTAATGAACTACTTGACAATGTTGACAACCTTACTTCTTTGCAGTTGGCAAAGCTTCGGCAAGATAGGTCACAGCTGAATATGAAAATTCAGCAGCTTGAAAAATATATTCATTCCAATAATCTTGAGGACAGGAAAAAGTCAAATTTGTTTGCATCCACAGCACCTACATCATTTGTATATGAAACTCCTCAGCAGACTCTCCACAGTAATGCACCAAAGACATATGAATCTCAGGATTATGTGGGTAATGGGACATGTGGGTCATTGTTCCAGTCTCTTTCATTCTCTTGTGCCGATACATATGGCGTGTCATCAGGTCCAGTGTCGAGGGAAGCTTTCATCCCAAAGATTATTGAAGTAAATTACATTGAAGGTTCTGGAGACAAGCGCTGGAGCAGTAAGGATTTTCCTTGGACAAAACAGTTGGAGGTTAATAATAAAAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGATCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAGAGTCTGACCTATCAGCTGCCAGCTCTTATCTGTCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATTATGCATCTACTACAGGCAAATATATCCGCTGCTTACTTAAGTGCTAATATGGAATGGACTGAACAGCAAGAGATCTTTAGAGAACTTAATTCCGAATATTGTAATTATAAGTTGTTGTATGTAACACCAGAAAAGATTGCCAAAAGTGACGCGCTTTTACGAAACTTGGAGAGTTTACATGCTCGAGAATTGCTTGCAAGAATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGCATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACTGCAACAGCTAGTGTCAAAGAGGACGTTGTGCAAGCATTAGGACTTGTTAACTGCATTGTTTTCCGGCAGAGTTTTAATCGCCCAAACTTAAGGTATTCTGTCCTTCCCAAGACCAAAAAGTGTTTGGAAGATGTTGACAAATTCATTAGGGAAAACCATTTTGATGAGTGTGGCATTATATATTGCCTTTCTCGAATGGACTGTGAAAAGGTTGCTGAAAAGTTGCAGGAGTTTGGACATAAGTCTGCATTTTATCATGGTAACATGGATCCTGCTCAACGTGCCTTTGTTCAAAAGCAGTGGAGTAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAGCCTGATGTTCGCTTCGTAATCCATCATTCCCTTCCAAAATCTATTGAAGGTTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCTACGTTCTTCCTGTATATTATATTACAGCTACAGTGATTATATTCGAGTTAAGCATATGATAAGTCAAGGAGCAATAGAGCAAAATTCAATGACATATGGATACAGTCGCTCAAATATGACAAATTCAGGAAGGATATTGGAAACAAACACTGAAAACCTTTTGCGAATGGTCAGTTATTGTGAAAATGACGTTGATTGTAGGCGTCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTTGATTCTTCAACATGTCAGAAAACATGTGATAATTGTTTGAAGAACACAAGTTTTATTGAGAAAGATGTCACCGAGATTGCAAAGCAATTGGTTGAACTGGTTAAGCTAACTGGGCAGAAGGTCTCATCATCACATATATTAGAAGTCTATCGTGGATCCTTAAGCCAGTTGGTCAAGAAACACCGTCATGATACTTTGAGCTTTCATGGTGCTGGGAAGCGTCTAGCTAAGGGTGAGGCTTCCCGAGTATTGCATCATCTTGTTGTAGAGGATTTTCTTGTGGAGGAGGTTAAAAAAAGTGATTTTTATGGATCAGTATCATCAATATTGAAGGTAAATGACCCCAAGGTCCGCAACCTGTTGCTCGGGGGCCAGAGAATTATACTGAGGTTCCCATCGTCCATAAAAGCATCAAAATTAGCGAAGTATGAGTTCACTCCAGCTAAAGGATCTCTGACATCTGGAAAACAAAATAGTCATCAAATTGATACTCCTGCTCAGCCCCAAACTCAAGTTGACATGAATCTTTCAGCAAAGTTATACTCAGCACTGCGGTTGCTGCGGGCAACTATTCTTGGTGAAGCTGGAGACGATGTCTTGGCTCACCACGTGTTCTGTAATTCTCTGTTGCAGCTGATGAGCAAGAAAGTACCAAGAACAAAGGAAGAACTCCTTGAACTCAATGGCATGAGCAAGGCCAAGGTAAGCAATTATGGTGATCAGATACTGGAAACCATCGAAAATACTATTAATGAGTATTACAAGTTGGATAAAAGCAGCAATGGCAGTGCTGATTCTGCAAAAAGGAGACGAGATGCAAATGGAGGCCTAGATAGAAATCTTGAGGATGATGATGAGTTGCCTAAAAGTACTGGTCGCTCAAAGAAAAGGACAGTGCAGAGAAATAATAAAAAGGCTGAGATATACCATTCTGAAGAGGAAGATAATTACTATGGATGTCTTGATGAGGACCTAGATTTTGACAATATAGAAAATGAAGCACTAAATAGAATAAACAGTAGGAATGCTAATGGAAGAGTACTGCCTCAATGGACACCATCTTGA 3528 0.4014 MDAQQTTNRMCSITQMKQFQSNSAGGLHCQGKRPSVNWSQHEEAHQNFSCQLKFLSSNFLFSLPTQKPQNGEPTDGRFVINQNPNIQTSQRAQVEKAWLALSSLQNSSRSYPQPGKTVQVTPRHHEDRRMNPLQRTHENDKLKPPDVTTTPIVTNHNSQVLDSSVNKHIKHAGQINESSTGMVVDIDDDDILETIDIDQIVENYQSSSTPKPPISKFPPITPTADTNNFARDGGNCLPPELCIDCNHGYKLGLCPEATSHLQEFKDNLIAISNELLDNVDNLTSLQLAKLRQDRSQLNMKIQQLEKYIHSNNLEDRKKSNLFASTAPTSFVYETPQQTLHSNAPKTYESQDYVGNGTCGSLFQSLSFSCADTYGVSSGPVSREAFIPKIIEVNYIEGSGDKRWSSKDFPWTKQLEVNNKKVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANISAAYLSANMEWTEQQEIFRELNSEYCNYKLLYVTPEKIAKSDALLRNLESLHARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVLPKTKKCLEDVDKFIRENHFDECGIIYCLSRMDCEKVAEKLQEFGHKSAFYHGNMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCILYYSYSDYIRVKHMISQGAIEQNSMTYGYSRSNMTNSGRILETNTENLLRMVSYCENDVDCRRLLQLAHFGEKFDSSTCQKTCDNCLKNTSFIEKDVTEIAKQLVELVKLTGQKVSSSHILEVYRGSLSQLVKKHRHDTLSFHGAGKRLAKGEASRVLHHLVVEDFLVEEVKKSDFYGSVSSILKVNDPKVRNLLLGGQRIILRFPSSIKASKLAKYEFTPAKGSLTSGKQNSHQIDTPAQPQTQVDMNLSAKLYSALRLLRATILGEAGDDVLAHHVFCNSLLQLMSKKVPRTKEELLELNGMSKAKVSNYGDQILETIENTINEYYKLDKSSNGSADSAKRRRDANGGLDRNLEDDDELPKSTGRSKKRTVQRNNKKAEIYHSEEEDNYYGCLDEDLDFDNIENEALNRINSRNANGRVLPQWTPS 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00311 1175 SUPERFAMILY HRDC-like 998 1071 IPR010997 GO:0000166|GO:0044237
Aip04g00311 1175 Gene3D - 841 951 IPR036388 -
Aip04g00311 1175 ProSiteProfiles HRDC domain profile. 995 1077 IPR002121 GO:0003676
Aip04g00311 1175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 435 610 IPR014001 -
Aip04g00311 1175 Coils Coil 287 307 - -
Aip04g00311 1175 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 549 558 IPR002464 -
Aip04g00311 1175 Pfam RQC domain 840 955 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aip04g00311 1175 SMART RQC_2 843 954 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aip04g00311 1175 SMART helicmild6 660 741 IPR001650 -
Aip04g00311 1175 CDD DEXHc_RecQ 418 617 - -
Aip04g00311 1175 Gene3D HRDC domain 991 1078 IPR044876 -
Aip04g00311 1175 Gene3D - 391 617 IPR027417 -
Aip04g00311 1175 Gene3D - 618 837 IPR027417 -
Aip04g00311 1175 MobiDBLite consensus disorder prediction 1078 1131 - -
Aip04g00311 1175 PANTHER DNA HELICASE RECQ FAMILY MEMBER 130 1143 - -
Aip04g00311 1175 Pfam DEAD/DEAH box helicase 429 597 IPR011545 GO:0003676|GO:0005524
Aip04g00311 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 759 IPR027417 -
Aip04g00311 1175 MobiDBLite consensus disorder prediction 1083 1114 - -
Aip04g00311 1175 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 130 1143 - -
Aip04g00311 1175 Pfam RecQ zinc-binding 752 834 IPR032284 -
Aip04g00311 1175 Pfam Helicase conserved C-terminal domain 636 740 IPR001650 -
Aip04g00311 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 885 IPR027417 -
Aip04g00311 1175 SMART ultradead3 423 626 IPR014001 -
Aip04g00311 1175 MobiDBLite consensus disorder prediction 106 128 - -
Aip04g00311 1175 Pfam HRDC domain 999 1067 IPR002121 GO:0003676
Aip04g00311 1175 CDD SF2_C_RecQ 618 750 - -
Aip04g00311 1175 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 635 785 IPR001650 -
Aip04g00311 1175 SMART hrdc7 995 1077 IPR002121 GO:0003676
Aip04g00311 1175 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 419 894 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00311 Aip-Chr4 3991507 3999027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00311 649 764 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 3.14e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00311 K10901 - gmx:100800006 1698.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00311 04 3991507 3999027 Aip04g00311 04 3991507 3999027 ECH