Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00301 ATGCGAGCTTCATGGGCTGATTTGGCTGCGAATACTGCAGCTGAGAACGCAGGTGCTGGTACTTCAGTCAATAATGCTGGAACTGGTAACAGTTTACCTCCTTCAAGGTCTACTTATGTGCCTCCGCATCTGAGGAACCGGCGGCCTTTGGCTGAATCACCTGCCCCTCCGTATAGTGGCAGTACAACTTCTGGTTCTGGGGCTGGTACAGCTAATGCTGGATCACGTTGGGGTGCACCTCGTGCCGAGAACCGTTCTGGGGTTGGCAGCAGTGGTGGCCGAGGAAATGTATGGGGGAACAGAAGTGCGGGTTGGGATCGCGGAAGGGACCGTGAGGTCAATCCATTTGGAGATCAGGATGATACGGAGCAACCATTTAATGAGCAAGAGAACTCGGGGATAAATTTTGATGCCTATGAGGACATTCCGGTGGAGACAAGCGGGGATAATGTGCCACCACCTGTGAATACATTTGCTGAAATTGACTTGGGTGAAGCGCTTAATCTTAATATAATGAGGTGCAAATATGTTAAGCCGACGCCTGTTCAACGGCATGCCATACCAATTTCCCTTGCTGGAAGGGATTTGATGGCCTGTGCACAGACTGGTTCTGGAAAGACGGCTGCTTTCTGTTTCCCAATTATCAGTGGAATTTTGAGGGGCCAACCTGTGCAAAGGCCACCTCGCGGGGTGCGTACAGTTTATCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTGCATATCAAACAGGGGTTAAGGTGGTTGTTGCTTATGGCGGAGCTCCAATAAACCATCAGCTACGAGATCTTGAGAAGGGGGTGGACATTCTTGTCGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATCAGATATCTTGCACTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTTGAACAAATGGATATGCCCCCTCCAGGTGTAAGACAGACTATGCTATTCAGTGCCACATTTCCTAAAGAGATACAGGTTTAG 1083 0.4885 MRASWADLAANTAAENAGAGTSVNNAGTGNSLPPSRSTYVPPHLRNRRPLAESPAPPYSGSTTSGSGAGTANAGSRWGAPRAENRSGVGSSGGRGNVWGNRSAGWDRGRDREVNPFGDQDDTEQPFNEQENSGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNLNIMRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFAYQTGVKVVVAYGGAPINHQLRDLEKGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00301 360 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 50 359 - -
Aip04g00301 360 Gene3D - 112 360 IPR027417 -
Aip04g00301 360 MobiDBLite consensus disorder prediction 104 118 - -
Aip04g00301 360 SMART ultradead3 175 359 IPR014001 -
Aip04g00301 360 Pfam DEAD/DEAH box helicase 180 358 IPR011545 GO:0003676|GO:0005524
Aip04g00301 360 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 360 IPR014001 -
Aip04g00301 360 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 50 359 - -
Aip04g00301 360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 358 IPR027417 -
Aip04g00301 360 MobiDBLite consensus disorder prediction 56 71 - -
Aip04g00301 360 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Aip04g00301 360 CDD DEADc_DDX3_DDX4 157 359 IPR044763 GO:0003724|GO:0005524
Aip04g00301 360 MobiDBLite consensus disorder prediction 14 129 - -
Aip04g00301 360 MobiDBLite consensus disorder prediction 15 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00301 Aip-Chr4 3880114 3881774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00301 115 357 Eukaryotic Initiation Factors Gene Family AT3G13920 34.274 2.23e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00301 K11594 - gmx:100795756 589.341