Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00300 ATGCGAGCTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAGGTTGCTGGTTCTGGTACTTCAGCCAACAATGCCGGGGCTAGTAACAGTTTACCTCCATCCCGGTCTACTTACGTGCCTCCGCATCTGAGGAACCGGCCGCCATCAGCTGAACCATCTGCCCCGCCATATAGTGGCGGTGCAACTTCTGGTTCTGGGGCTGATGCAGTTAATTCTGGATCACGTTGGGGTGCACCTCGTGGCGATTACCGTTCAGGGGGGAACAAAAGTGGATGGGGGAGCAGAAGTGGGGGTTGGGATCGTGGGAGGGACCGTGAGGTCAATCCGTTTGGAGATCAGGATGACACAGAGGAGGCATTTGGTGAGCAAGAGAACACGGGGATAAATTTTGATGCCTACGAGGACATTCCGGTGGAGACTAGCGGGGATAATGTGCCACCACCTGTGAATACATTTGCTGAGATTGACTTGGGTGAAGCACTTAATCGTAATATAATGAGGTGCAAATATGTTAAGCCGACGCCTGTTCAGCGGCATGCCATACCAATTTCCCTTGCTGGAAGGGATTTGATGGCCTGTGCTCAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCAATTATCAGTGGAATTCTGAGGGGCCAACCTATGCAAAGGCCACCTCGTGGTGTGCGTACTGTGTATCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCAATGCAAATACATGACGAGGCTAGGAAGTTTGCATATCAAACAGGCGTTAAGGTGGTGGTTGCTTATGGTGGAGCTCCAATAAACCATCAGCTAAGAGAGCTTGAGAAGGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATAAGATATCTAGCCCTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCGCAAATAAGGAAGATTGTCGAACAAATGGATATGCCTCCTCCAGGTGTAAGACAGACTATGCTATTCAGTGCCACGTTTCCTAAAGAGATACAGAGACTAGCCTCGGATTTCCTGTCAAAATACATTTTTCTTGCTGTTGGAAGAGTTGGGTCAAGTACCGATTTAATTGTCCAAAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCATCTCATGGATCTTCTTCATGCACAAAGAGCAAATGGCGTGCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCACTGGAACATTGGCTGTGTATGAATGGTTTTCCAGCTACTACCATTCATGGAGACCGGACTCAACAGGAAAGAGAAATGGCATTAAGGTCATTTAAGAGTGGCAACACGCCCATATTGGTTGCCACTGATGTGGCTGCACGCGGTCTTGATATTCCTCATGTCGCCCATGTTGTTAACTTTGACCTTCCCAATGATATTGATGACTATGTACACCGTATCGGAAGGACGGGACGTGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGACAACAATGCCTCCCTTGCAAGGTCTTTAGCAGAACTAATGCAGGAAGCAAATCAAGAAGTGCCAGCATGGCTCTCACGGTATGCTGCTCGATCTTCATTTGGAGGTAGGAACCGTCGTTCGGGAGGAGGGCGTTTTGGTGGCCGAGACTTTCGAAGAGAAGGTTCTTTCAATAGGGGTGGTTCTGATTACTACAATGCCGGAAACAGCAGTGGTGGATATGGTGCGTCTGGTGGATATGGTCCCGGTGGAACCAGTGCATGGGATTAA 1818 0.484 MRASWADLAANSAAEVAGSGTSANNAGASNSLPPSRSTYVPPHLRNRPPSAEPSAPPYSGGATSGSGADAVNSGSRWGAPRGDYRSGGNKSGWGSRSGGWDRGRDREVNPFGDQDDTEEAFGEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNRNIMRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRGQPMQRPPRGVRTVYPLALVLSPTRELSMQIHDEARKFAYQTGVKVVVAYGGAPINHQLRELEKGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSKYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCMNGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLAELMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRREGSFNRGGSDYYNAGNSSGGYGASGGYGPGGTSAWD 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00300 605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 378 545 IPR001650 -
Aip04g00300 605 SMART helicmild6 425 506 IPR001650 -
Aip04g00300 605 MobiDBLite consensus disorder prediction 1 126 - -
Aip04g00300 605 Pfam Helicase conserved C-terminal domain 391 506 IPR001650 -
Aip04g00300 605 Gene3D - 370 549 IPR027417 -
Aip04g00300 605 Gene3D - 107 369 IPR027417 -
Aip04g00300 605 MobiDBLite consensus disorder prediction 57 71 - -
Aip04g00300 605 MobiDBLite consensus disorder prediction 584 605 - -
Aip04g00300 605 CDD SF2_C_DEAD 379 515 - -
Aip04g00300 605 Pfam DEAD/DEAH box helicase 175 356 IPR011545 GO:0003676|GO:0005524
Aip04g00300 605 MobiDBLite consensus disorder prediction 99 113 - -
Aip04g00300 605 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Aip04g00300 605 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 55 577 - -
Aip04g00300 605 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 577 - -
Aip04g00300 605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 367 IPR014001 -
Aip04g00300 605 CDD DEADc_DDX3_DDX4 152 373 IPR044763 GO:0003724|GO:0005524
Aip04g00300 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 522 IPR027417 -
Aip04g00300 605 SMART ultradead3 170 382 IPR014001 -
Aip04g00300 605 MobiDBLite consensus disorder prediction 15 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00300 Aip-Chr4 3842773 3847751 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00300 149 538 Eukaryotic Initiation Factors Gene Family AT3G19760 32.225 5.37e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00300 K11594 - gmx:100795756 952.199