Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00297 ATGTTAAAGGCAAAGGTATTCAATGGCGCGAACGTGTTCATGTNCGGTGCTCAAGTGCACCTCTGCTGCGACCCTTCCCGCAATGGCCCCAATGATTACCATGTCATTTCTTGCAGTAAACATGAGAAGTTTGAGGATCTTAAAGCCAAAGGCTGCAAATTGCTTGGACCCAGATGTGTTCTTTCATGTGCTAAAGAACTTAAGCCTTTGCCTAAAGTTGGATTTACGTGTTGCCTTGCCATGGATGGTGTCAAAATACTTGCATCTGGCTTCGATACCAATGAGAAGCTTAAGATAGAAGAGATTGTGACTGAAATGGGTGGTCTTCTACATACTAAAGCATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTGGCTGCAAAATACAAGTGGGCTTTGAATATACTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGAGGAGCATCGTGTTGTTCCTCAGGAGTCATACAAGGTCCTTCCTTTCTCCGGGTTGACGATTTGTGTTACTGGGATTCCAGCAGATAAACGCAAAGAGATTGAGAAGCTTACTTTACAAAATGGTGGAAAGTACTCTGCAGAATTGACAAAGAAGTGCACTCATTTGATTTCTGATATATCCTTCCAGTGGTCCTCTACTTTTAATGAGGCTCCTGAAGGTGACAAATATAAGGTAGCAAAACGTTGGGGCCATATTCATACTGTGACGAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAGTCCTACCCAGTTCAGAATGGACCTGTATCTTCACAGAAAGTGATTAAGGACATAGATGTACAGCATAGCCAAGAAAAGGATATTAGGAAATTTCAATCTGGAGTATCCTCAGCTGTTACAGATCCAAACATGCCGGTTTCTTCTTATGCTGAGTTTGTAGATAAAGACCAAGAAGCTACATGTTCAGAATACATGTCTTCTTTTACAAATATTGCTACATTTGTCAAAGATACAAATGTTGAAGCACCTCGAGGAAAGCCCAGTGATGAATTGAACCTTGATGGCCCTGTTGCCAATGATTCTGAATCTGATGATAATGATCTGTACTTATCCGAGTGCAAAATCTTTCTTGTTGGCTTTGAAGCTTCTGACATGCGGAAACTAGTTAATATGGTGCGGAAAGGTGGAGGTTCCCGATATATGTCTTTAAATGCCAAGCTGACACACATAGTTGTTGGAAACCCTTCAGAATCGGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTAGGTGTCATTTATGTTGTTAAAACGTCCTGGCTTGAAGATTGTAACCGTGAAAAGAAAGAAGTCCCTGTTCTAAGGAGACACATTGCATCTGATCTACTTGTTCCAAAAGGAAGCATTGTCAAAGGAGCATCAACAGGCATGTCCATGGTTCAAGGTAAAAGCTGTAGTTTTCCTAAAAGCTTGCAGAGTACTCAGGTGGTGGGAGTTATGGCCTCTGGAGGTGTAAAGCCAGTATCTTTGGGGAAAGATAAACTGGATGTGGGTACAAGTGTTCACTCATTCAGTAAAGCAATGGGGCAAAATCAACATGCTGCTAATAAGATGACAGCTCAAAAGATGACAGTGACACAACGTGATCCCAGTGTAGAATATGTTAAGTCCACAACAGTTTTCAAAGGGAAAATCTTTTGTTTCTCGGATTTATTTCCTGAAGAAAGGAGAGCTGAGGTCATCGAATGGATACATCAAGGGGGAGGACAAGTAATAAGTGGGAAAGTAAAACATGGTGTCCATTTTACTGTTGAATGTCATGGTGTAACACCCATGATGACAGCAAATTCCCAAAATACCTATGTTTCGAGTCATTGGATACGATCTTGCTTACAGGCCGGATACCTAATGGATGTTGGCAGTCATATTCTTTATTCTCCACTTCCCTGTCACGTTCCCTTGCCTGGGTTTGAAAGCTTTCGGTTTTGTGTTTCGCAATATGAGGAAAAAGAAAGAATTCTACTAAGGAACTTGTGTTTTGTTTTGGGAGCTAAATTTGTGGAGAAGTTAACGAAGAAGGTCAGCCATTTGTTGTGTAAATTCAAGAATGGGCCCAAGTATGATGCTGCTTGTAAATGGGGGATCCGGTCAGTTACTGCTGAATGGCTGTTTGAATGTGTCAAACAGAATGGAGTAGTTGCCATAGACCATTTTTTACCAAAAGAAGTCACTGCTCAAGATCGGGAGGCAGGAATTTGTACTGTGAGTCAATTTCCTACTCAGGCTGTTCAAATGATAAGTGATCTGACGTCCCAGTTTCCGAATCAATCACAAAATTTGACAGACAAAGTAAATAGAGGCATATATAGCGGACTTGCCAGTAATGGGACCGATTTAAAAATATCAAATATTCAGAGCAAAAAGGCAAGGCTTGTGGAAGATCCTGATAAGGTGTCTTCTGCAGTATATTCAGGTATTCATCATTTCAATGGAATGAATTTTTCTGAAGACAATACGGTAAAAGATGCTGGACAGGTTCCTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGGAGACAAGTAAGATGCATGATCAGAGGTCACCAGGGAGTACAGGGCGTGAGAGAAGTATCTATTCATCTGGTTGTACTATCGTTTGTGAAGAGAATTCCAATCCTAATGCTGTGTTTGGATTGTCGAAACACTGGTTAAACAGAGGTGGCAGAAAAGATGATGATGGTGAGGCTTCTCGAGACAGAGGAGCTGAAACTTATGATGGTTTTAGCGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAGGATTTGTCTGGAAGGCAAATGCTTATTGACAGAGTTCGAACTCGAAGTAGCGCACAATAA 2892 0.4101 MLKAKVFNGANVFMXGAQVHLCCDPSRNGPNDYHVISCSKHEKFEDLKAKGCKLLGPRCVLSCAKELKPLPKVGFTCCLAMDGVKILASGFDTNEKLKIEEIVTEMGGLLHTKASLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLTICVTGIPADKRKEIEKLTLQNGGKYSAELTKKCTHLISDISFQWSSTFNEAPEGDKYKVAKRWGHIHTVTRKWFDQSIARRACLNEESYPVQNGPVSSQKVIKDIDVQHSQEKDIRKFQSGVSSAVTDPNMPVSSYAEFVDKDQEATCSEYMSSFTNIATFVKDTNVEAPRGKPSDELNLDGPVANDSESDDNDLYLSECKIFLVGFEASDMRKLVNMVRKGGGSRYMSLNAKLTHIVVGNPSESEKKDVRSLAALGVIYVVKTSWLEDCNREKKEVPVLRRHIASDLLVPKGSIVKGASTGMSMVQGKSCSFPKSLQSTQVVGVMASGGVKPVSLGKDKLDVGTSVHSFSKAMGQNQHAANKMTAQKMTVTQRDPSVEYVKSTTVFKGKIFCFSDLFPEERRAEVIEWIHQGGGQVISGKVKHGVHFTVECHGVTPMMTANSQNTYVSSHWIRSCLQAGYLMDVGSHILYSPLPCHVPLPGFESFRFCVSQYEEKERILLRNLCFVLGAKFVEKLTKKVSHLLCKFKNGPKYDAACKWGIRSVTAEWLFECVKQNGVVAIDHFLPKEVTAQDREAGICTVSQFPTQAVQMISDLTSQFPNQSQNLTDKVNRGIYSGLASNGTDLKISNIQSKKARLVEDPDKVSSAVYSGIHHFNGMNFSEDNTVKDAGQVPHAVPDVAAAIEDLLEETSKMHDQRSPGSTGRERSIYSSGCTIVCEENSNPNAVFGLSKHWLNRGGRKDDDGEASRDRGAETYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSAQ 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00297 963 Gene3D BRCT domain 167 264 IPR036420 -
Aip04g00297 963 CDD BRCT_TopBP1_rpt2_like 653 728 - -
Aip04g00297 963 CDD BRCT 84 151 - -
Aip04g00297 963 Gene3D BRCT domain 552 648 IPR036420 -
Aip04g00297 963 MobiDBLite consensus disorder prediction 906 943 - -
Aip04g00297 963 SUPERFAMILY BRCT domain 167 264 IPR036420 -
Aip04g00297 963 ProSiteProfiles BRCT domain profile. 364 456 IPR001357 -
Aip04g00297 963 Pfam BRCA1 C Terminus (BRCT) domain 81 151 IPR001357 -
Aip04g00297 963 Pfam BRCA1 C Terminus (BRCT) domain 366 442 IPR001357 -
Aip04g00297 963 ProSiteProfiles BRCT domain profile. 655 738 IPR001357 -
Aip04g00297 963 ProSiteProfiles BRCT domain profile. 163 263 IPR001357 -
Aip04g00297 963 MobiDBLite consensus disorder prediction 906 927 - -
Aip04g00297 963 Gene3D BRCT domain 356 453 IPR036420 -
Aip04g00297 963 Gene3D BRCT domain 77 166 IPR036420 -
Aip04g00297 963 SMART BRCT_7 652 728 IPR001357 -
Aip04g00297 963 SMART BRCT_7 556 632 IPR001357 -
Aip04g00297 963 SMART BRCT_7 78 155 IPR001357 -
Aip04g00297 963 SMART BRCT_7 366 446 IPR001357 -
Aip04g00297 963 SMART BRCT_7 165 253 IPR001357 -
Aip04g00297 963 Gene3D BRCT domain 20 75 IPR036420 -
Aip04g00297 963 Gene3D BRCT domain 649 742 IPR036420 -
Aip04g00297 963 ProSiteProfiles BRCT domain profile. 554 642 IPR001357 -
Aip04g00297 963 SUPERFAMILY BRCT domain 651 739 IPR036420 -
Aip04g00297 963 ProSiteProfiles BRCT domain profile. 81 165 IPR001357 -
Aip04g00297 963 SUPERFAMILY BRCT domain 557 644 IPR036420 -
Aip04g00297 963 SUPERFAMILY BRCT domain 366 450 IPR036420 -
Aip04g00297 963 Pfam twin BRCT domain 659 720 IPR001357 -
Aip04g00297 963 Pfam twin BRCT domain 171 245 IPR001357 -
Aip04g00297 963 CDD BRCT_TopBP1_rpt2_like 167 253 - -
Aip04g00297 963 MobiDBLite consensus disorder prediction 339 359 - -
Aip04g00297 963 SUPERFAMILY BRCT domain 40 164 IPR036420 -
Aip04g00297 963 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 12 951 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00297 Aip-Chr4 3792762 3800387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00297 1 961 Core DNA Replication Machinery Family AT1G77320 48.035 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00297 K10728 - gmx:100804966 1269.6