Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00277 ATGTGCTCCTCTGCCCTTCCTAGTTCTTATCACCATCACCGCTTAACATCGCCACCCAAAACAATTTTCCCATTCCCATCCAAAACAACAACCCACTACTACTCACCCAAACCCGACATTATTAACAATCCGACCCGACCCGCGCTGCGACTGAGCATCAGAGCAAATGCTTCTACGTCGTCGTTCGATGCGTTAGCGGTGGCGACGGAGGAAGCGAATGCGAGCTTGTACGAGGTTCTTGGCGTGCCGGAGTGGGTGGCGGTGGCGGAATTGAAGCAGGCGTACAAGAAGCTTGCGAGGAAGTTCCATCCGGACGTGTCGCCACCGGGTCGGGCTGAAGAGTACACAAGGAGGTTTATTCGTGTGCAGCAGGCCTACGAGACTCTCTCTGATCCCACAATGAGAGAGCTCTATGATAGAGATATGGCTATGGCCGTCAAGTTCCCCTTCTCCTCTCGCTTCGGCCACCGCCGCGCCACCAGCTTCCACCGTCAACATCCCCACCCTCACTGTTACACGGTGATCTTGAATTCTAGTAGCCAAGTTAATGTGTTTCTAGATTGTTCAACTACAAATCAACTTGGGGTTATGAGTTCTAAAGAAAAGAGTGTTATTGTGGATTCCACAAATCAAATCGATGAAGATGGTTTGACGAATTTCGTGCTTACGGTGGCTGGTGTGAGTGCGGTGGTGCTTCTTCTAAGGAGCGACGTGAAGCAATCTGCCAACATATTCAGGTGCAACGTTAAGCACATCCGTAACTGGCTCGAAGAAGAAACCGCTGCTTCTTCCAAGGAAATGCAAAAATCTGCAAAAGAATTGGAATCAAAGGAATCCGATCCTACGTGGCACTCCCTCCCCTATCTTCAACCCCTCTCTCTCTTACTCACACACACACTCTCTCTCTCCAAACCCCACTCTGGCCCCTTCTTCCTCAACACTCACTCCCTCACCATCCACTCCGCCCTTCACGCCGACAAAGCCATCCTTTTCTCCCTCCCCACCACCTCTGATCCCATCAAGGACACCCTCCTCACTCTCATGCTTTCCAACCACTCTTCCTTCATCGTCACCTTCTCAACCTCCCCTTCCTCTTCCGCACTCCAAATCCGGGATGGTACTTCTCAACCATCTTTTCATACCGGTCAACCAAGCCAGCCAAGTAACTGTGCAGGTAGTAAGAATTCTCAAGGAAAACAACATCATCATCGTCCCCCTCGTCTTCATCTATCTCTTCCCCAGATTCATTCTCCTCTTCATCAATTATGGAAAAAAAATTCAAACTTTGAAAAAAATCAGCCACTCCACAAATCAGTAACAAAAAAAAATCAAAGTGAAGGAGAAAAGGACACGCGATTGAGGAACACAGGTATGAACGTGTTGAAGAGAGAGAGAGAGAACAAAAACAACATAGAGACAGAAGACATGTCTGCCTTTGATACCTACAGCGTCGACTCCGATCACCACCAAAACCACGCCGACGAAGACAATTTCTCTGGATATGGCGGCTACTCCAACTTCTCCGGCGGCAATGTCCCCATCGTTGATCACACTTCTCCGTCTGCTTCACCAGACATCTTCGGGTTCAGCGATCTAGATCGAAGCTACTCCCAGTCTCCCTTCGAACTGGTGCATGTAGCAGAAAATGGTAACGACAACGACTACCACGATGACAGCGTTTTTGTCTCAGACGAACCAGTGCTTCCAGCGCCTACAGAAATGTGA 1725 0.4928 MCSSALPSSYHHHRLTSPPKTIFPFPSKTTTHYYSPKPDIINNPTRPALRLSIRANASTSSFDALAVATEEANASLYEVLGVPEWVAVAELKQAYKKLARKFHPDVSPPGRAEEYTRRFIRVQQAYETLSDPTMRELYDRDMAMAVKFPFSSRFGHRRATSFHRQHPHPHCYTVILNSSSQVNVFLDCSTTNQLGVMSSKEKSVIVDSTNQIDEDGLTNFVLTVAGVSAVVLLLRSDVKQSANIFRCNVKHIRNWLEEETAASSKEMQKSAKELESKESDPTWHSLPYLQPLSLLLTHTLSLSKPHSGPFFLNTHSLTIHSALHADKAILFSLPTTSDPIKDTLLTLMLSNHSSFIVTFSTSPSSSALQIRDGTSQPSFHTGQPSQPSNCAGSKNSQGKQHHHRPPRLHLSLPQIHSPLHQLWKKNSNFEKNQPLHKSVTKKNQSEGEKDTRLRNTGMNVLKRERENKNNIETEDMSAFDTYSVDSDHHQNHADEDNFSGYGGYSNFSGGNVPIVDHTSPSASPDIFGFSDLDRSYSQSPFELVHVAENGNDNDYHDDSVFVSDEPVLPAPTEM 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00277 574 ProSitePatterns Nt-dnaJ domain signature. 119 138 IPR018253 -
Aip04g00277 574 Gene3D DnaJ domain 61 151 IPR036869 -
Aip04g00277 574 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 38 160 - -
Aip04g00277 574 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 38 160 - -
Aip04g00277 574 MobiDBLite consensus disorder prediction 365 396 - -
Aip04g00277 574 CDD DnaJ 77 131 IPR001623 -
Aip04g00277 574 MobiDBLite consensus disorder prediction 548 574 - -
Aip04g00277 574 SUPERFAMILY Chaperone J-domain 73 150 IPR036869 -
Aip04g00277 574 PRINTS DnaJ domain signature 77 95 IPR001623 -
Aip04g00277 574 PRINTS DnaJ domain signature 114 134 IPR001623 -
Aip04g00277 574 PRINTS DnaJ domain signature 95 110 IPR001623 -
Aip04g00277 574 Pfam DnaJ domain 76 139 IPR001623 -
Aip04g00277 574 MobiDBLite consensus disorder prediction 365 406 - -
Aip04g00277 574 SMART dnaj_3 74 134 IPR001623 -
Aip04g00277 574 MobiDBLite consensus disorder prediction 435 456 - -
Aip04g00277 574 ProSiteProfiles dnaJ domain profile. 75 142 IPR001623 -
Aip04g00277 574 MobiDBLite consensus disorder prediction 429 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00277 Aip-Chr4 3462051 3472926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00277 77 139 C2H2 Transcription Factor Family AT1G74250 40.909 6.53e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00277 - - ahf:112795692 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00277 04 3462051 3472926 Aip04g00277 04 3462051 3472926 ECH