Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00274 ATGGCATTGTGTAACAAGCTTGGAAATTTCTTGAGACAGAGTGCTTCCGGAAGTGGATTAGCACCTGCTCCATCGATGCTCAATTATATTCGCTGCATGTCCTCAAACAGGCTTTTCATTGGGGGCCTTTCATACGGAGTTGATGACCAGTCTCTTCGGGATGCATTCTCCGGCTTTGGGGATGTGGTTGATGCAAAGGTGGTCACTGATAGAGACACCGGAAGATCAAGAGGTTTTGGATTTGTCAACTTCTCAAGCGACGAGTCTGCAAGCTCAGCACTCAGTGGAATGGATGGGCAGGATCTAAACGGCCGAGTGATCAGGGTGAGCTATGCTAATGATAGGCCTACTGGACCTCGGGGTGGTGGCGGTGGTTTTGGTGGTGGTGGTGGTGGTTATGGGGGAGGTGGTTACCGTAGAGGTGGAGGTGGTGGTTATGGTGATCCAGACTTCTAG 456 0.5088 MALCNKLGNFLRQSASGSGLAPAPSMLNYIRCMSSNRLFIGGLSYGVDDQSLRDAFSGFGDVVDAKVVTDRDTGRSRGFGFVNFSSDESASSALSGMDGQDLNGRVIRVSYANDRPTGPRGGGGGFGGGGGGYGGGGYRRGGGGGYGDPDF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00274 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Aip04g00274 151 SMART rrm1_1 37 110 IPR000504 GO:0003723
Aip04g00274 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Aip04g00274 151 Gene3D - 31 148 IPR012677 -
Aip04g00274 151 MobiDBLite consensus disorder prediction 112 151 - -
Aip04g00274 151 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 147 - -
Aip04g00274 151 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 147 - -
Aip04g00274 151 SUPERFAMILY RNA-binding domain, RBD 31 145 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00274 Aip-Chr4 3427890 3428946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00274 38 115 Eukaryotic Initiation Factors Gene Family AT2G23350 35.897 3.64e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00274 - - gmx:100499841 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00274 04 3427890 3428946 Aip04g00274 04 3427890 3428946 ECH